Angiosperm phylogeny: 17 genes, 640 taxa DE Soltis, SA Smith, N Cellinese, KJ Wurdack, DC Tank, SF Brockington, ... American Journal of Botany 98 (4), 704–730, 2011 | 740 | 2011 |
Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales Z Xi, BR Ruhfel, H Schaefer, AM Amorim, M Sugumaran, KJ Wurdack, ... Proceedings of the National Academy of Sciences 109 (43), 17519–17524, 2012 | 387 | 2012 |
Implementing and testing the multispecies coalescent model: a valuable paradigm for phylogenomics SV Edwards, Z Xi, A Janke, BC Faircloth, JE McCormack, TC Glenn, ... Molecular Phylogenetics and Evolution 94, 447–462, 2016 | 371 | 2016 |
WGDI: a user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes P Sun, B Jiao, Y Yang, L Shan, T Li, X Li, Z Xi, X Wang, J Liu bioRxiv, 2021.04.29, 2021 | 236 | 2021 |
Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies Z Xi, L Liu, JS Rest, CC Davis Systematic Biology 63 (6), 919–932, 2014 | 209 | 2014 |
Estimating phylogenetic trees from genome-scale data L Liu, Z Xi, S Wu, CC Davis, SV Edwards Annals of the New York Academy of Sciences 1360, 36–53, 2015 | 197 | 2015 |
The impact of missing data on species tree estimation Z Xi, L Liu, CC Davis Molecular Biology and Evolution 33 (3), 838–860, 2016 | 182 | 2016 |
Phylogeny of the clusioid clade (Malpighiales): evidence from the plastid and mitochondrial genomes BR Ruhfel, V Bittrich, CP Bove, MHG Gustafsson, CT Philbrick, ... American Journal of Botany 98 (2), 306–325, 2011 | 166 | 2011 |
Shifts in plant distributions in response to climate warming in a biodiversity hotspot, the Hengduan Mountains Q Liang, X Xu, K Mao, M Wang, K Wang, Z Xi, J Liu Journal of Biogeography 45 (6), 1334–1344, 2018 | 157 | 2018 |
Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway JW Horn, Z Xi, R Riina, JA Peirson, Y Yang, BL Dorsey, PE Berry, ... Evolution 68 (12), 3485–3504, 2014 | 151 | 2014 |
Massive mitochondrial gene transfer in a parasitic flowering plant clade Z Xi, Y Wang, RK Bradley, M Sugumaran, CJ Marx, JS Rest, CC Davis PLOS Genetics 9 (2), e1003265, 2013 | 144 | 2013 |
Horizontal transfer of expressed genes in a parasitic flowering plant Z Xi, RK Bradley, KJ Wurdack, KM Wong, M Sugumaran, K Bomblies, ... BMC Genomics 13, 227, 2012 | 129 | 2012 |
Long-term morphological stasis maintained by a plant–pollinator mutualism CC Davis, H Schaefer, Z Xi, DA Baum, MJ Donoghue, LJ Harmon Proceedings of the National Academy of Sciences 111 (16), 5914–5919, 2014 | 120 | 2014 |
Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased Z Xi, L Liu, CC Davis Molecular Phylogenetics and Evolution 92, 63–71, 2015 | 118 | 2015 |
Ancient polymorphisms and divergence hitchhiking contribute to genomic islands of divergence within a poplar species complex T Ma, K Wang, Q Hu, Z Xi, D Wan, Q Wang, J Feng, D Jiang, H Ahani, ... Proceedings of the National Academy of Sciences 115 (2), E236–E243, 2018 | 113 | 2018 |
Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval L Cai, Z Xi, AM Amorim, M Sugumaran, JS Rest, L Liu, CC Davis New Phytologist 221 (1), 565–576, 2019 | 111 | 2019 |
Widespread ancient whole genome duplications in Malpighiales coincide with Eocene global climatic upheaval L Cai, Z Xi, AM Amorim, M Sugumaran, JS Rest, L Liu, CC Davis bioRxiv, 215608, 2017 | 111 | 2017 |
Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution Y Yang, P Sun, L Lv, D Wang, D Ru, Y Li, T Ma, L Zhang, X Shen, F Meng, ... Nature Plants 6 (3), 215–222, 2020 | 110 | 2020 |
Phylogenetic analysis of the plastid inverted repeat for 244 species: insights into deeper-level angiosperm relationships from a long, slowly evolving sequence region MJ Moore, N Hassan, MA Gitzendanner, RA Bruenn, M Croley, ... International Journal of Plant Sciences 172 (4), 541–558, 2011 | 104 | 2011 |
The perfect storm: gene tree estimation error, incomplete lineage sorting, and ancient gene flow explain the most recalcitrant ancient angiosperm clade, Malpighiales L Cai, Z Xi, EM Lemmon, AR Lemmon, A Mast, CE Buddenhagen, L Liu, ... Systematic Biology 70 (3), 491–507, 2021 | 100 | 2021 |