Steven E. Brenner
Steven E. Brenner
Verified email at berkeley.edu - Homepage
Title
Cited by
Cited by
Year
WebLogo: a sequence logo generator
GE Crooks, G Hon, JM Chandonia, SE Brenner
Genome research 14 (6), 1188-1190, 2004
95522004
SCOP: a structural classification of proteins database for the investigation of sequences and structures
AG Murzin, SE Brenner, T Hubbard, C Chothia
Journal of molecular biology 247 (4), 536-540, 1995
79441995
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
Science 309 (5740), 1559-1563, 2005
35742005
The Bioperl toolkit: Perl modules for the life sciences
JE Stajich, D Block, K Boulez, SE Brenner, SA Chervitz, C Dagdigian, ...
Genome research 12 (10), 1611-1618, 2002
18182002
The developmental transcriptome of Drosophila melanogaster
BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ...
Nature 471 (7339), 473-479, 2011
13882011
SCOP database in 2004: refinements integrate structure and sequence family data
A Andreeva, D Howorth, SE Brenner, TJP Hubbard, C Chothia, AG Murzin
Nucleic acids research 32 (suppl_1), D226-D229, 2004
11442004
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
BP Lewis, RE Green, SE Brenner
Proceedings of the National Academy of Sciences 100 (1), 189-192, 2003
11012003
Data growth and its impact on the SCOP database: new developments
A Andreeva, D Howorth, JM Chandonia, SE Brenner, TJP Hubbard, ...
Nucleic acids research 36 (suppl_1), D419-D425, 2007
10832007
Errors in genome annotation
SE Brenner
Trends in Genetics 15 (4), 132-133, 1999
10031999
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ...
PLoS Biol 5 (3), e16, 2007
9282007
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
8962010
Unlocking the secrets of the genome
SE Celniker, et al.
Nature 459, 927-930, 2009
8472009
SCOP: a structural classification of proteins database
L Lo Conte, B Ailey, TJP Hubbard, SE Brenner, AG Murzin, C Chothia
Nucleic acids research 28 (1), 257-259, 2000
8182000
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
7782013
Biases in Illumina transcriptome sequencing caused by random hexamer priming
KD Hansen, SE Brenner, S Dudoit
Nucleic acids research 38 (12), e131-e131, 2010
7352010
The ASTRAL compendium in 2004
JM Chandonia, G Hon, NS Walker, L Lo Conte, P Koehl, M Levitt, ...
Nucleic acids research 32 (suppl_1), D189-D192, 2004
7092004
Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
SE Brenner, C Chothia, TJP Hubbard
Proceedings of the National Academy of Sciences 95 (11), 6073-6078, 1998
6681998
SCOP database in 2002: refinements accommodate structural genomics
L Lo Conte, SE Brenner, TJP Hubbard, C Chothia, AG Murzin
Nucleic acids research 30 (1), 264-267, 2002
6242002
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
LF Lareau, M Inada, RE Green, JC Wengrod, SE Brenner
Nature 446 (7138), 926-929, 2007
5912007
SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures
NK Fox, SE Brenner, JM Chandonia
Nucleic acids research 42 (D1), D304-D309, 2014
5372014
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