Ali Punjani
Ali Punjani
PhD Candidate, University of Toronto, Vector Institute
Verified email at cs.toronto.edu - Homepage
Title
Cited by
Cited by
Year
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
A Punjani, JL Rubinstein, DJ Fleet, MA Brubaker
Nature methods 14 (3), 290-296, 2017
13762017
Fast search in hamming space with multi-index hashing
M Norouzi, A Punjani, DJ Fleet
2012 IEEE conference on computer vision and pattern recognition, 3108-3115, 2012
2692012
Fast exact search in hamming space with multi-index hashing
M Norouzi, A Punjani, DJ Fleet
IEEE transactions on pattern analysis and machine intelligence 36 (6), 1107-1119, 2013
1652013
Deep learning helicopter dynamics models
A Punjani, P Abbeel
2015 IEEE International Conference on Robotics and Automation (ICRA), 3223-3230, 2015
1272015
Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction
A Punjani, H Zhang, DJ Fleet
Nature Methods 17 (12), 1214-1221, 2020
602020
3D Variability Analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM
A Punjani, DJ Fleet
Journal of Structural Biology 213 (2), 107702, 2021
442021
Building proteins in a day: Efficient 3D molecular structure estimation with electron cryomicroscopy
A Punjani, MA Brubaker, DJ Fleet
IEEE transactions on pattern analysis and machine intelligence 39 (4), 706-718, 2016
232016
Building proteins in a day: Efficient 3D molecular reconstruction
MA Brubaker, A Punjani, DJ Fleet
Proceedings of the IEEE Conference on Computer Vision and Pattern …, 2015
162015
Alpha-Beta Divergences Discover Micro and Macro Structures in Data.
KS Narayan, A Punjani, P Abbeel
ICML, 796-804, 2015
82015
Protocol for rapid unsupervised cryo-EM structure determination using cryoSPARC software
A Punjani, M Brubaker, J Rubinstein, D Fleet
22017
Microscopic advances with large-scale learning: Stochastic optimization for cryo-EM
A Punjani, MA Brubaker
arXiv preprint arXiv:1501.04656, 2015
22015
Machine learning for helicopter dynamics models
A Punjani, P Abbeel
University of California, Berkeley, 2014
12014
3D Flexible Refinement: Structure and Motion of Flexible Proteins from Cryo-EM
A Punjani, DJ Fleet
bioRxiv, 2021
2021
Algorithmic Advances in Single Particle Cryo-EM Data Processing Using CryoSPARC
A Punjani
Microscopy and Microanalysis 26 (S2), 2322-2323, 2020
2020
Structural disorder and conformational flexibility in single particle cryo-EM
A Punjani, D Fleet
Foundations of Crystallography 76, a222, 2020
2020
Recent algorithmic advances for single-particle cryo-EM
A Punjani
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 75, A405-A405, 2019
2019
Single-particle CryoEM: Data Processing Techniques for Obtaining Optimal Results
A Punjani
Microscopy and Microanalysis 24 (S1), 2328-2329, 2018
2018
Algorithmic Advances in Single Particle Cryo-EM Data Processing
A Punjani, H Zhang, J Rubinstein, M Brubaker, D Fleet
Microscopy and Microanalysis 24 (S1), 868-869, 2018
2018
Efficient 3D Macromolecular Reconstruction with Electron Cryomicroscopy
MA Brubaker, A Punjani, DJ Fleet
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Articles 1–19