John Murray
John Murray
Associate Professor of Genetics, Perelman School of Medicine, University of Pennsylvania
Verified email at pennmedicine.upenn.edu
Title
Cited by
Cited by
Year
Identification of genes periodically expressed in the human cell cycle and their expression in tumors
ML Whitfield, G Sherlock, AJ Saldanha, JI Murray, CA Ball, KE Alexander, ...
Molecular biology of the cell 13 (6), 1977-2000, 2002
16202002
Identification of genes periodically expressed in the human cell cycle and their expression in tumors
ML Whitfield, G Sherlock, AJ Saldanha, JI Murray, CA Ball, KE Alexander, ...
Molecular biology of the cell 13 (6), 1977-2000, 2002
16202002
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
9542010
Systemic and cell type-specific gene expression patterns in scleroderma skin
ML Whitfield, DR Finlay, JI Murray, OG Troyanskaya, JT Chi, ...
Proceedings of the National Academy of Sciences 100 (21), 12319-12324, 2003
4222003
Automated cell lineage tracing in Caenorhabditis elegans
Z Bao, JI Murray, T Boyle, SL Ooi, MJ Sandel, RH Waterston
Proceedings of the National Academy of Sciences 103 (8), 2707-2712, 2006
3512006
The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response
ND Trinklein, JI Murray, SJ Hartman, D Botstein, RM Myers
Molecular biology of the cell 15 (3), 1254-1261, 2004
3462004
The role of heat shock transcription factor 1 in the genome-wide regulation of the mammalian heat shock response
ND Trinklein, JI Murray, SJ Hartman, D Botstein, RM Myers
Molecular biology of the cell 15 (3), 1254-1261, 2004
3462004
Diverse and specific gene expression responses to stresses in cultured human cells
JI Murray, ML Whitfield, ND Trinklein, RM Myers, PO Brown, D Botstein
Molecular biology of the cell 15 (5), 2361-2374, 2004
3392004
SAVER: gene expression recovery for single-cell RNA sequencing
M Huang, J Wang, E Torre, H Dueck, S Shaffer, R Bonasio, JI Murray, ...
Nature methods 15 (7), 539-542, 2018
2452018
Genomics in C. elegans: so many genes, such a little worm
LDW Hillier, A Coulson, JI Murray, Z Bao, JE Sulston, RH Waterston
Genome research 15 (12), 1651-1660, 2005
2312005
A genome-scale resource for in vivo tag-based protein function exploration in C. elegans
M Sarov, JI Murray, K Schanze, A Pozniakovski, W Niu, K Angermann, ...
Cell 150 (4), 855-866, 2012
2172012
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
W Niu, ZJ Lu, M Zhong, M Sarov, JI Murray, CM Brdlik, J Janette, C Chen, ...
Genome research 21 (2), 245-254, 2011
2132011
Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response
M Zhong, W Niu, ZJ Lu, M Sarov, JI Murray, J Janette, D Raha, ...
PLoS Genet 6 (2), e1000848, 2010
1762010
Automated analysis of embryonic gene expression with cellular resolution in C. elegans
JI Murray, Z Bao, TJ Boyle, ME Boeck, BL Mericle, TJ Nicholas, Z Zhao, ...
Nature methods 5 (8), 703-709, 2008
1722008
Analysis of cell fate from single-cell gene expression profiles in C. elegans
X Liu, F Long, H Peng, SJ Aerni, M Jiang, A Sánchez-Blanco, JI Murray, ...
Cell 139 (3), 623-633, 2009
1432009
Global analysis of RNA secondary structure in two metazoans
F Li, Q Zheng, P Ryvkin, I Dragomir, Y Desai, S Aiyer, O Valladares, ...
Cell Reports 1 (1), 69-82, 2012
1352012
Multidimensional regulation of gene expression in the C. elegans embryo
JI Murray, TJ Boyle, E Preston, D Vafeados, B Mericle, P Weisdepp, ...
Genome research 22 (7), 1282-1294, 2012
1202012
A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
JS Packer, Q Zhu, C Huynh, P Sivaramakrishnan, E Preston, H Dueck, ...
Science 365 (6459), 2019
1112019
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
TJ Boyle, Z Bao, JI Murray, CL Araya, RH Waterston
BMC bioinformatics 7 (1), 1-14, 2006
1012006
The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
JI Murray, Z Bao, TJ Boyle, RH Waterston
Nature protocols 1 (3), 1468-1476, 2006
1002006
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Articles 1–20