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Steve Hoffmann
Steve Hoffmann
Professor of Computational Biology, Leibniz Institute on Aging
Verified email at bioinf.uni-leipzig.de
Title
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Cited by
Year
Signatures of mutational processes in human cancer
LB Alexandrov, S Nik-Zainal, DC Wedge, SAJR Aparicio, S Behjati, ...
Nature 500 (7463), 415-421, 2013
96922013
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1671*2020
The primary transcriptome of the major human pathogen Helicobacter pylori
CM Sharma, S Hoffmann, F Darfeuille, J Reignier, S Findeiß, A Sittka, ...
Nature 464 (7286), 250-255, 2010
13042010
The African coelacanth genome provides insights into tetrapod evolution
CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ...
Nature 496 (7445), 311-316, 2013
7392013
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
S Hoffmann, C Otto, S Kurtz, CM Sharma, P Khaitovich, J Vogel, ...
PLoS computational biology 5 (9), e1000502, 2009
6292009
Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing
Nature genetics 44 (12), 1316-1320, 2012
4792012
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ...
PLoS biology 8 (9), e1000475, 2010
4662010
Alu Elements in ANRIL Non-Coding RNA at Chromosome 9p21 Modulate Atherogenic Cell Functions through Trans-Regulation of Gene Networks
LM Holdt, S Hoffmann, K Sass, D Langenberger, M Scholz, K Krohn, ...
PLoS genetics 9 (7), e1003588, 2013
4092013
metilene: Fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
F Jühling, H Kretzmer, SH Bernhart, C Otto, PF Stadler, S Hoffmann
Genome Research 26 (2), 256-262, 2016
2912016
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
S Hoffmann, C Otto, G Doose, A Tanzer, D Langenberger, S Christ, ...
Genome biology 15, 1-11, 2014
2832014
Evolution of vault RNAs
PF Stadler, JJL Chen, J Hackermüller, S Hoffmann, F Horn, P Khaitovich, ...
Molecular biology and evolution 26 (9), 1975-1991, 2009
1702009
Evidence for human microRNA-offset RNAs in small RNA sequencing data
D Langenberger, C Bermudez-Santana, J Hertel, S Hoffmann, ...
Bioinformatics 25 (18), 2298-2301, 2009
1562009
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ...
Nature genetics 47 (11), 1316-1325, 2015
1402015
In vitro chemosensitivity of freshly explanted tumor cells to pemetrexed is correlated with target gene expression
AR Hanauske, U Eismann, O Oberschmidt, H Pospisil, S Hoffmann, ...
Investigational new drugs 25, 417-423, 2007
1332007
Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions
C Schmidtke, S Findeiß, CM Sharma, J Kuhfuß, S Hoffmann, J Vogel, ...
Nucleic acids research 40 (5), 2020-2031, 2012
1292012
HLA-DRB1∗ 0401 and HLA-DRB1∗ 0408 are strongly associated with the development of antibodies against interferon-β therapy in multiple sclerosis
S Hoffmann, S Cepok, V Grummel, K Lehmann-Horn, J Hackermueller, ...
The American Journal of Human Genetics 83 (2), 219-227, 2008
1282008
Lacking alignments? The next-generation sequencing mapper segemehl revisited
C Otto, PF Stadler, S Hoffmann
Bioinformatics 30 (13), 1837-1843, 2014
1262014
Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
SH Bernhart, H Kretzmer, LM Holdt, F Jühling, O Ammerpohl, ...
Scientific reports 6 (1), 37393, 2016
1152016
Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma
C López, K Kleinheinz, SM Aukema, M Rohde, SH Bernhart, ...
Nature communications 10 (1), 1459, 2019
1142019
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments
M Fasold, D Langenberger, H Binder, PF Stadler, S Hoffmann
Nucleic acids research 39 (suppl_2), W112-W117, 2011
1132011
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Articles 1–20