Arun Ramani
Arun Ramani
The Hospital for Sick Children, Scientific Director, Centre for Computational Medicine
Verified email at
Cited by
Cited by
How complete are current yeast and human protein-interaction networks?
GT Hart, AK Ramani, EM Marcotte
Genome biology 7 (11), 1-9, 2006
Comparative experiments on learning information extractors for proteins and their interactions
R Bunescu, R Ge, RJ Kate, EM Marcotte, RJ Mooney, AK Ramani, ...
Artificial intelligence in medicine 33 (2), 139-155, 2005
Protein interaction networks from yeast to human
P Bork, LJ Jensen, C Von Mering, AK Ramani, I Lee, EM Marcotte
Current opinion in structural biology 14 (3), 292-299, 2004
Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome
AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
Genome biology 6 (5), 1-12, 2005
Exploiting the co-evolution of interacting proteins to discover interaction specificity
AK Ramani, EM Marcotte
Journal of molecular biology 327 (1), 273-284, 2003
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
JY Ip, D Schmidt, Q Pan, AK Ramani, AG Fraser, DT Odom, BJ Blencowe
Genome research 21 (3), 390-401, 2011
Genome-wide analysis of alternative splicing in Caenorhabditis elegans
AK Ramani, JA Calarco, Q Pan, S Mavandadi, Y Wang, AC Nelson, ...
Genome research 21 (2), 342-348, 2011
Expanding the boundaries of RNA sequencing as a diagnostic tool for rare Mendelian disease
HD Gonorazky, S Naumenko, AK Ramani, V Nelakuditi, P Mashouri, ...
The American Journal of Human Genetics 104 (3), 466-483, 2019
High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans
AK Ramani, AC Nelson, P Kapranov, I Bell, TR Gingeras, AG Fraser
Genome biology 10 (9), 1-18, 2009
A map of human protein interactions derived from co‐expression of human mRNAs and their orthologs
AK Ramani, Z Li, GT Hart, MW Carlson, DR Boutz, EM Marcotte
Molecular systems biology 4 (1), 180, 2008
Spatial genomic heterogeneity in diffuse intrinsic pontine and midline high-grade glioma: implications for diagnostic biopsy and targeted therapeutics
LM Hoffman, M DeWire, S Ryall, P Buczkowicz, J Leach, L Miles, ...
Acta neuropathologica communications 4 (1), 1-8, 2016
Integrating co-occurrence statistics with information extraction for robust retrieval of protein interactions from Medline
R Bunescu, R Mooney, A Ramani, E Marcotte
Proceedings of the hlt-naacl bionlp workshop on linking natural language and …, 2006
Alterations in ALK/ROS1/NTRK/MET drive a group of infantile hemispheric gliomas.
AS Guerreiro Stucklin, S Ryall, K Fukuoka, M Zapotocky, A Lassaletta, ...
A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types
AD Norris, S Gao, ML Norris, D Ray, AK Ramani, AG Fraser, Q Morris, ...
Molecular cell 54 (6), 946-959, 2014
The majority of animal genes are required for wild-type fitness
AK Ramani, T Chuluunbaatar, AJ Verster, H Na, V Vu, N Pelte, ...
Cell 148 (4), 792-802, 2012
Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene function
AJ Verster, AK Ramani, SJ McKay, AG Fraser
PLoS Genet 10 (2), e1004077, 2014
Learning to extract proteins and their interactions from medline abstracts
R Bunescu, R Ge, RJ Kate, RJ Mooney, YW Wong, EM Marcotte, ...
Proceedings of the ICML-2003 Workshop on Machine Learning in Bioinformatics …, 2003
Identification of complex genomic rearrangements in cancers using CouGaR
M Dzamba, AK Ramani, P Buczkowicz, Y Jiang, M Yu, C Hawkins, ...
Genome research 27 (1), 107-117, 2017
Prevalence and clinical features of inflammatory bowel diseases associated with monogenic variants, identified by whole-exome sequencing in 1000 children at a single center
E Crowley, N Warner, J Pan, S Khalouei, A Elkadri, K Fiedler, J Foong, ...
Gastroenterology 158 (8), 2208-2220, 2020
Tamoxifen therapy in a murine model of myotubular myopathy
N Maani, N Sabha, K Rezai, A Ramani, L Groom, N Eltayeb, ...
Nature communications 9 (1), 1-16, 2018
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