| Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues CJ Meehan, GA Goig, TA Kohl, L Verboven, A Dippenaar, M Ezewudo, ... NATURE reviews microbiology 17 (9), 533-545, 2019 | 381 | 2019 |
| A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region JCS Ngabonziza, C Loiseau, M Marceau, A Jouet, F Menardo, O Tzfadia, ... Nature communications 11 (1), 2917, 2020 | 200 | 2020 |
| A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex D Brites, C Loiseau, F Menardo, S Borrell, MB Boniotti, R Warren, ... Frontiers in microbiology 9, 2820, 2018 | 188 | 2018 |
| Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species F Menardo, CR Praz, S Wyder, R Ben-David, S Bourras, H Matsumae, ... Nature Genetics 48 (2), 201-205, 2016 | 186 | 2016 |
| The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis TM Walker, P Miotto, CU Köser, PW Fowler, J Knaggs, Z Iqbal, M Hunt, ... The Lancet Microbe 3 (4), e265-e273, 2022 | 185 | 2022 |
| Multiple Avirulence Loci and Allele-Specific Effector Recognition Control the Pm3 Race-Specific Resistance of Wheat to Powdery Mildew S Bourras, KE McNally, R Ben-David, F Parlange, S Roffler, CR Praz, ... The Plant Cell 27 (10), 2991-3012, 2015 | 177 | 2015 |
| Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history M Coscolla, S Gagneux, F Menardo, C Loiseau, P Ruiz-Rodriguez, ... Microbial genomics 7 (2), 000477, 2021 | 159 | 2021 |
| The molecular clock of Mycobacterium tuberculosis F Menardo, S Duchêne, D Brites, S Gagneux PLoS pathogens 15 (9), e1008067, 2019 | 142 | 2019 |
| Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity F Menardo, C Loiseau, D Brites, M Coscolla, S Gygli, L Rutaihwa, ... BMC Bioinformatics 19, 164, 2018 | 130 | 2018 |
| AvrPm2 encodes an RNase‐like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungus CR Praz, S Bourras, F Zeng, J Sánchez‐Martín, F Menardo, M Xue, ... New Phytologist 213 (3), 1301-1314, 2017 | 117 | 2017 |
| The AvrPm3-Pm3 effector-NLR interactions control both race-specific resistance and host-specificity of cereal mildews on wheat S Bourras, L Kunz, M Xue, CR Praz, MC Müller, C Kälin, M Schläfli, ... Nature communications 10 (1), 2292, 2019 | 112 | 2019 |
| A chromosome‐scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew MC Müller, CR Praz, AG Sotiropoulos, F Menardo, L Kunz, S Schudel, ... New Phytologist 221 (4), 2176-2189, 2019 | 88 | 2019 |
| Rapid turnover of effectors in grass powdery mildew (Blumeria graminis) F Menardo, CR Praz, T Wicker, B Keller BMC evolutionary biology 17, 1-14, 2017 | 63 | 2017 |
| Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis JL Payne, F Menardo, A Trauner, S Borrell, SM Gygli, C Loiseau, ... PLoS biology 17 (5), e3000265, 2019 | 59 | 2019 |
| An African origin for Mycobacterium bovis C Loiseau, F Menardo, A Aseffa, E Hailu, B Gumi, G Ameni, S Berg, ... Evolution, Medicine and Public Health, 2020 | 58 | 2020 |
| Genetic and molecular characterization of a locus involved in avirulence of Blumeria graminis f. sp. tritici on wheat Pm3 resistance alleles F Parlange, S Roffler, F Menardo, R Ben-David, S Bourras, KE McNally, ... Fungal Genetics and Biology 82, 181-192, 2015 | 57 | 2015 |
| Multiple Introductions of the Mycobacterium tuberculosis Lineage 2 Beijing into Africa over centuries LK Rutaihwa, F Menardo, D Stucki, SM Gygli, SD Ley, B Malla, ... Frontiers in Ecology and Evolution, 7 (112), https://doi.org/10.3389/fevo …, 2019 | 49 | 2019 |
| Reconstructing the Evolutionary History of Powdery Mildew Lineages (Blumeria graminis) at Different Evolutionary Time Scales with NGS Data F Menardo, T Wicker, B Keller Genome Biology and Evolution 9 (2), 446-456, 2017 | 40 | 2017 |
| Non-parent of origin expression of numerous effector genes indicates a role of gene regulation in host adaption of the hybrid triticale powdery mildew pathogen CR Praz, F Menardo, MD Robinson, MC Müller, T Wicker, S Bourras, ... Frontiers in plant science 9, 49, 2018 | 36 | 2018 |
| Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim F Menardo, LK Rutaihwa, M Zwyer, S Borrell, I Comas, EC Conceição, ... F1000Research 10, 2021 | 35 | 2021 |
