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Scott W Simpkins
Scott W Simpkins
Octant Bio
Verified email at octant.bio
Title
Cited by
Cited by
Year
A global genetic interaction network maps a wiring diagram of cellular function
M Costanzo, B VanderSluis, EN Koch, A Baryshnikova, C Pons, G Tan, ...
Science 353 (6306), 2016
12012016
CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities
K Han, SE Pierce, A Li, K Spees, GR Anderson, JA Seoane, YH Lo, ...
Nature 580 (7801), 136-141, 2020
2252020
Coculture of marine invertebrate-associated bacteria and interdisciplinary technologies enable biosynthesis and discovery of a new antibiotic, keyicin
N Adnani, MG Chevrette, SN Adibhatla, F Zhang, Q Yu, DR Braun, ...
ACS chemical biology 12 (12), 3093-3102, 2017
1202017
Erratum: Functional annotation of chemical libraries across diverse biological processes
JS Piotrowski, SC Li, R Deshpande, SW Simpkins, J Nelson, Y Yashiroda, ...
Nature chemical biology 13 (12), 1286-1286, 2017
84*2017
Functional annotation of chemical libraries across diverse biological processes
JS Piotrowski, SC Li, R Deshpande, SW Simpkins, J Nelson, Y Yashiroda, ...
Nature chemical biology 13 (9), 982, 2017
842017
Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing
JS Bloom, EM Jones, M Gasperini, NB Lubock, L Sathe, C Munugala, ...
medRxiv, 2020
502020
Targeted three-dimensional liquid chromatography: A versatile tool for quantitative trace analysis in complex matrices
SW Simpkins, JW Bedard, SR Groskreutz, MM Swenson, TE Liskutin, ...
Journal of Chromatography A 1217 (49), 7648-7660, 2010
482010
Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite
EH Morales, CA Pinto, R Luraschi, CM Muñoz-Villagrán, FA Cornejo, ...
Nature communications 8 (1), 1-12, 2017
392017
Chemical genomic profiling via barcode sequencing to predict compound mode of action
JS Piotrowski, SW Simpkins, SC Li, R Deshpande, SJ McIlwain, IM Ong, ...
Chemical Biology: Methods and Protocols, 299-318, 2015
392015
Chemical Genomics, Structure Elucidation, and in Vivo Studies of the Marine-Derived Anticlostridial Ecteinamycin
TP Wyche, RFR Alvarenga, JS Piotrowski, MN Duster, SR Warrack, ...
ACS Chemical Biology 12 (9), 2287-2295, 2017
272017
Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions
SW Simpkins, J Nelson, R Deshpande, SC Li, JS Piotrowski, EH Wilson, ...
PLOS Computational Biology 14 (10), e1006532, 2018
20*2018
MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action
J Nelson, SW Simpkins, H Safizadeh, S Li, J Piotrowski, H Hirano, ...
bioRxiv, 112854, 2017
202017
Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments
SW Simpkins, R Deshpande, J Nelson, SC Li, JS Piotrowski, HN Ward, ...
Nature protocols 14 (2), 415-440, 2019
182019
A New Natural Product Analog of Blasticidin S Reveals Cellular Uptake Facilitated by the NorA Multidrug Transporter
JR Davison, KM Lohith, X Wang, K Bobyk, SR Mandadapu, SL Lee, ...
Antimicrobial Agents and Chemotherapy 61 (6), e02635-16, 2017
182017
Reliable and accurate diagnostics from highly multiplexed sequencing assays
AS Booeshaghi, NB Lubock, AR Cooper, SW Simpkins, JS Bloom, ...
Scientific reports 10 (1), 1-7, 2020
17*2020
Efficient strategies for screening large-scale genetic interaction networks
R Deshpande, J Nelson, SW Simpkins, M Costanzo, JS Piotrowski, SC Li, ...
bioRxiv, 159632, 2017
102017
Contamination of deconjugation enzymes derived from Helix pomatia with the plant bioactive compounds 3, 3′-diindolylmethane, 5-methoxypsoralen, and 8-methoxypsoralen
CE Ainslie-Waldman, SW Simpkins, P Upadhyaya, SG Carmella, ...
Food and chemical toxicology 62, 188-193, 2013
62013
Integrating yeast chemical genomics and mammalian cell pathway analysis
F Zhou, SC Li, Y Zhu, W Guo, L Shao, J Nelson, S Simpkins, D Yang, ...
Acta Pharmacologica Sinica 40 (9), 1245-1255, 2019
52019
Improving prediction of compound function from chemical structure using chemical-genetic networks
H Safizadeh, SW Simpkins, J Nelson, CL Myers
bioRxiv, 112698, 2017
42017
Publisher Correction: Integrating yeast chemical genomics and mammalian cell pathway analysis.
FL Zhou, SC Li, Y Zhu, WJ Guo, LJ Shao, J Nelson, S Simpkins, DH Yang, ...
Acta Pharmacologica Sinica 41 (5), 729, 2020
2020
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