Roded Sharan

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Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIHVerified email at nih.gov
Ron ShamirProfessor of Computer Science and Bioinformatics, Tel Aviv UniversityVerified email at tau.ac.il
Trey IdekerUniversity of California San DiegoVerified email at ucsd.edu
martin kupiecProfessor of Genetics, Tel Aviv UniversityVerified email at post.tau.ac.il
Tomer ShlomiProfessor of Computer Science and Biology, TechnionVerified email at cs.technion.ac.il
Nir YosefAssociate Professor, Department of Systems Immunology, Weizmann Institute of ScienceVerified email at berkeley.edu
Nir AtiasPhD Student, Tel Aviv UniversityVerified email at post.tau.ac.il
Amos TanayWeizmann InstituteVerified email at weizmann.ac.il
Ran ElkonTel Aviv UniversityVerified email at tauex.tau.ac.il
Mark DM LeisersonMosaicVerified email at mosaic.us
Assaf GottliebAssistant Professor, McWilliams School of Biomedical Informatics, UTHealth, Houston, TXVerified email at uth.edu
Tal PupkoProfessor of Life Sciences, Tel-Aviv UniversityVerified email at tauex.tau.ac.il
Shiri FreilichResearcher, Agricultural Research OrganizationVerified email at volcani.agri.gov.il
Uri GophnaThe Shmunis School of Biomedicine and Cancer Research, Tel Aviv UniversityVerified email at tauex.tau.ac.il
Yosef ShilohTel Aviv UniversityVerified email at post.tau.ac.il
Igor UlitskyWeizmann Institute of ScienceVerified email at weizmann.ac.il
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu
Teresa PrzytyckaNCBI / NLM / NIHVerified email at ncbi.nlm.nih.gov
Itay SasonTel-Aviv UniversityVerified email at mail.tau.ac.il
Amir Ben-DorSenior Scientist, Agilent LaboratoriesVerified email at agilent.com

Roded Sharan

Tel Aviv University

Verified email at post.tau.ac.il


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Network‐based prediction of protein function R Sharan, I Ulitsky, R Shamir Molecular systems biology 3 (1), 88, 2007	1314	2007
Discovering statistically significant biclusters in gene expression data A Tanay, R Sharan, R Shamir Bioinformatics 18 (suppl_1), S136-S144, 2002	1215	2002
Protein networks in disease T Ideker, R Sharan Genome research 18 (4), 644-652, 2008	1002	2008
Associating genes and protein complexes with disease via network propagation O Vanunu, O Magger, E Ruppin, T Shlomi, R Sharan PLoS computational biology 6 (1), e1000641, 2010	968	2010
Conserved patterns of protein interaction in multiple species R Sharan, S Suthram, RM Kelley, T Kuhn, S McCuine, P Uetz, T Sittler, ... Proceedings of the National Academy of Sciences 102 (6), 1974-1979, 2005	953	2005
PREDICT: a method for inferring novel drug indications with application to personalized medicine A Gottlieb, GY Stein, E Ruppin, R Sharan Molecular systems biology 7 (1), 496, 2011	889	2011
Modeling cellular machinery through biological network comparison R Sharan, T Ideker Nature biotechnology 24 (4), 427-433, 2006	711	2006
CLICK: a clustering algorithm with applications to gene expression analysis R Sharan, R Shamir Proc Int Conf Intell Syst Mol Biol 8 (307), 16, 2000	701	2000
Conserved pathways within bacteria and yeast as revealed by global protein network alignment BP Kelley, R Sharan, RM Karp, T Sittler, DE Root, BR Stockwell, T Ideker Proceedings of the National Academy of Sciences 100 (20), 11394-11399, 2003	686	2003
Network propagation: a universal amplifier of genetic associations L Cowen, T Ideker, BJ Raphael, R Sharan Nature Reviews Genetics 18 (9), 551-562, 2017	626	2017
Competitive and cooperative metabolic interactions in bacterial communities S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ... Nature communications 2 (1), 589, 2011	547	2011
An initial blueprint for myogenic differentiation A Blais, M Tsikitis, D Acosta-Alvear, R Sharan, Y Kluger, BD Dynlacht Genes & development 19 (5), 553-569, 2005	536	2005
PathBLAST: a tool for alignment of protein interaction networks BP Kelley, B Yuan, F Lewitter, R Sharan, BR Stockwell, T Ideker Nucleic acids research 32 (suppl_2), W83-W88, 2004	531	2004
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data A Tanay, R Sharan, M Kupiec, R Shamir Proceedings of the National Academy of Sciences 101 (9), 2981-2986, 2004	507	2004
CLICK and EXPANDER: a system for clustering and visualizing gene expression data R Sharan, A Maron-Katz, R Shamir Bioinformatics 19 (14), 1787-1799, 2003	456	2003
Cluster graph modification problems R Shamir, R Sharan, D Tsur Discrete Applied Mathematics 144 (1-2), 173-182, 2004	401	2004
Using deep learning to model the hierarchical structure and function of a cell J Ma, MK Yu, S Fong, K Ono, E Sage, B Demchak, R Sharan, T Ideker Nature methods 15 (4), 290-298, 2018	397	2018
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells R Elkon, C Linhart, R Sharan, R Shamir, Y Shiloh Genome research 13 (5), 773-780, 2003	388	2003
EXPANDER – an integrative program suite for microarray data analysis R Shamir, A Maron-Katz, A Tanay, C Linhart, I Steinfeld, R Sharan, ... BMC bioinformatics 6, 1-12, 2005	373	2005
Efficient algorithms for detecting signaling pathways in protein interaction networks J Scott, T Ideker, RM Karp, R Sharan Journal of Computational Biology 13 (2), 133-144, 2006	371	2006

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