Pavel Afonine
Pavel Afonine
Scientist at LBNL
Verified email at lbl.gov
Title
Cited by
Cited by
Year
PHENIX: a comprehensive Python-based system for macromolecular structure solution
PD Adams, PV Afonine, G Bunkóczi, VB Chen, IW Davis, N Echols, ...
Acta Crystallographica Section D: Biological Crystallography 66 (2), 213-221, 2010
177612010
Towards automated crystallographic structure refinement with phenix. refine
PV Afonine, RW Grosse-Kunstleve, N Echols, JJ Headd, NW Moriarty, ...
Acta Crystallographica Section D: Biological Crystallography 68 (4), 352-367, 2012
34512012
Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard
TC Terwilliger, RW Grosse-Kunstleve, PV Afonine, NW Moriarty, PH Zwart, ...
Acta Crystallographica Section D: Biological Crystallography 64 (1), 61-69, 2008
12062008
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ...
Acta Crystallographica Section D: Structural Biology 75 (10), 861-877, 2019
9032019
Bunkó czi
PD Adams, PV Afonine
G., Chen, VB, Davis, IW, Echols, N., Headd, JJ, Hung, LW, Kapral, GJ, Grosse …, 2010
8852010
Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
TC Terwilliger, PD Adams, RJ Read, AJ McCoy, NW Moriarty, ...
Acta Crystallographica Section D: Biological Crystallography 65 (6), 582-601, 2009
7342009
Real-space refinement in PHENIX for cryo-EM and crystallography
PV Afonine, BK Poon, RJ Read, OV Sobolev, TC Terwilliger, ...
Acta Crystallographica Section D: Structural Biology 74 (6), 531-544, 2018
6392018
The Phenix software for automated determination of macromolecular structures
PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ...
Methods 55 (1), 94-106, 2011
6272011
Automated structure solution with the PHENIX suite
PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung, TR Ioerger, ...
Structural Proteomics, 419-435, 2008
4812008
Polder maps: improving OMIT maps by excluding bulk solvent
D Liebschner, PV Afonine, NW Moriarty, BK Poon, OV Sobolev, ...
Acta Crystallographica Section D: Structural Biology 73 (2), 148-157, 2017
3132017
The Phenix refinement framework
PV Afonine, RW Grosse-Kunstleve, PD Adams
CCP4 newsletter 42, 2005
2972005
Structure of photosystem II and substrate binding at room temperature
ID Young, M Ibrahim, R Chatterjee, S Gul, FD Fuller, S Koroidov, ...
Nature 540 (7633), 453-457, 2016
2622016
New tools for the analysis and validation of cryo-EM maps and atomic models
PV Afonine, BP Klaholz, NW Moriarty, BK Poon, OV Sobolev, ...
Acta Crystallographica Section D: Structural Biology 74 (9), 814-840, 2018
2412018
Joint X-ray and neutron refinement with phenix. refine
PV Afonine, M Mustyakimov, RW Grosse-Kunstleve, NW Moriarty, ...
Acta Crystallographica Section D: Biological Crystallography 66 (11), 1153-1163, 2010
2322010
Modelling dynamics in protein crystal structures by ensemble refinement
BT Burnley, PV Afonine, PD Adams, P Gros
Elife 1, e00311, 2012
2032012
A robust bulk-solvent correction and anisotropic scaling procedure
PV Afonine, RW Grosse-Kunstleve, PD Adams
Acta Crystallographica Section D: Biological Crystallography 61 (7), 850-855, 2005
1992005
Use of knowledge-based restraints in phenix. refine to improve macromolecular refinement at low resolution
JJ Headd, N Echols, PV Afonine, RW Grosse-Kunstleve, VB Chen, ...
Acta Crystallographica Section D: Biological Crystallography 68 (4), 381-390, 2012
1782012
Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias
TC Terwilliger, RW Grosse-Kunstleve, PV Afonine, NW Moriarty, ...
Acta Crystallographica Section D: Biological Crystallography 64 (5), 515-524, 2008
1632008
Structure and membrane remodeling activity of ESCRT-III helical polymers
J McCullough, AK Clippinger, N Talledge, ML Skowyra, MG Saunders, ...
Science 350 (6267), 1548-1551, 2015
1582015
Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules
PD Adams, M Mustyakimov, PV Afonine, P Langan
Acta Crystallographica Section D: Biological Crystallography 65 (6), 567-573, 2009
1382009
The system can't perform the operation now. Try again later.
Articles 1–20