Indika Kahanda
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
Using transactional information to predict link strength in online social networks
I Kahanda, J Neville
Proceedings of the International AAAI Conference on Web and Social Media 3 (1), 2009
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct
CS Funk, I Kahanda, A Ben-Hur, KM Verspoor
Journal of biomedical semantics 6 (1), 1-14, 2015
Phenostruct: Prediction of human phenotype ontology terms using heterogeneous data sources
I Kahanda, C Funk, K Verspoor, A Ben-Hur
F1000Research 4, 2015
A close look at protein function prediction evaluation protocols
I Kahanda, CS Funk, F Ullah, KM Verspoor, A Ben-Hur
GigaScience 4 (1), s13742-015-0082-5, 2015
Quality assurance of bioinformatics software: a case study of testing a biomedical text processing tool using metamorphic testing
M Srinivasan, MP Shahri, I Kahanda, U Kanewala
Proceedings of the 3rd International Workshop on Metamorphic Testing, 26-33, 2018
Relational similarity model for suggesting friends in online social networks
M Mohajireen, C Ellepola, M Perera, I Kahanda, U Kanewala
2011 6th International Conference on Industrial and Information Systems, 334-339, 2011
Exploring frequented regions in pan-genomic graphs
A Cleary, T Ramaraj, I Kahanda, J Mudge, B Mumey
IEEE/ACM transactions on computational biology and bioinformatics 16 (5 …, 2018
Gostruct 2.0: Automated protein function prediction for annotated proteins
I Kahanda, A Ben-Hur
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
Exploring Frequented Regions in Pan-Genomic Graphs
BM Alan Cleary, Thiruvarangan Ramaraj, Indika Kahanda, Joann Mudge
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
Automatically generating psychiatric case notes from digital transcripts of doctor-patient conversations
N Kazi, I Kahanda
Proceedings of the 2nd Clinical Natural Language Processing Workshop, 140-148, 2019
Metamorphic testing for quality assurance of protein function prediction tools
MP Shahri, M Srinivasan, G Reynolds, D Bimczok, I Kahanda, ...
2019 IEEE International Conference On Artificial Intelligence Testing …, 2019
Extracting Co-mention Features from Biomedical Literature for Automated Protein Phenotype Prediction using PHENOstruct
MP Shahri, I Kahanda
International Conference on Bioinformatics and Computational Biology, 2018
Propheno 1.0: An online dataset for accelerating the complete characterization of the human protein-phenotype landscape in biomedical literature
MP Shahri, I Kahanda
2020 IEEE 14th International Conference on Semantic Computing (ICSC), 416-423, 2020
Pangenome-wide association studies with frequented regions
B Manuweera, J Mudge, I Kahanda, B Mumey, T Ramaraj, A Cleary
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
PPPred: Classifying protein-phenotype co-mentions extracted from biomedical literature
M Pourreza Shahri, G Reynolds, MM Roe, I Kahanda
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
Overview of the BioCreative VI text-mining services for Kinome Curation Track
J Gobeill, P Gaudet, D Dopp, A Morrone, I Kahanda, YY Hsu, CH Wei, ...
Database 2018, 2018
KinDER: A Biocuration Tool for Extracting Kinase Knowledge from Biomedical Literature
D Dopp, A Morrone, I Kahanda
BioCreative VI Workshop, 2017
DeepACPpred: A Novel Hybrid CNN-RNN Architecture for Predicting Anti-Cancer Peptides
N Lane, I Kahanda
International Conference on Practical Applications of Computational Biology …, 2020
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