Indika Kahanda
Title
Cited by
Cited by
Year
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2802016
Using transactional information to predict link strength in online social networks
I Kahanda, J Neville
Proceedings of the International AAAI Conference on Web and Social Media 3 (1), 2009
2792009
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
952019
Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct
CS Funk, I Kahanda, A Ben-Hur, KM Verspoor
Journal of biomedical semantics 6 (1), 1-14, 2015
312015
Phenostruct: Prediction of human phenotype ontology terms using heterogeneous data sources
I Kahanda, C Funk, K Verspoor, A Ben-Hur
F1000Research 4, 2015
252015
A close look at protein function prediction evaluation protocols
I Kahanda, CS Funk, F Ullah, KM Verspoor, A Ben-Hur
GigaScience 4 (1), s13742-015-0082-5, 2015
182015
Quality assurance of bioinformatics software: a case study of testing a biomedical text processing tool using metamorphic testing
M Srinivasan, MP Shahri, I Kahanda, U Kanewala
Proceedings of the 3rd International Workshop on Metamorphic Testing, 26-33, 2018
82018
Relational similarity model for suggesting friends in online social networks
M Mohajireen, C Ellepola, M Perera, I Kahanda, U Kanewala
2011 6th International Conference on Industrial and Information Systems, 334-339, 2011
82011
Exploring frequented regions in pan-genomic graphs
A Cleary, T Ramaraj, I Kahanda, J Mudge, B Mumey
IEEE/ACM transactions on computational biology and bioinformatics 16 (5 …, 2018
72018
Gostruct 2.0: Automated protein function prediction for annotated proteins
I Kahanda, A Ben-Hur
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
72017
Exploring Frequented Regions in Pan-Genomic Graphs
BM Alan Cleary, Thiruvarangan Ramaraj, Indika Kahanda, Joann Mudge
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
7*2017
Automatically generating psychiatric case notes from digital transcripts of doctor-patient conversations
N Kazi, I Kahanda
Proceedings of the 2nd Clinical Natural Language Processing Workshop, 140-148, 2019
52019
Metamorphic testing for quality assurance of protein function prediction tools
MP Shahri, M Srinivasan, G Reynolds, D Bimczok, I Kahanda, ...
2019 IEEE International Conference On Artificial Intelligence Testing …, 2019
52019
Extracting Co-mention Features from Biomedical Literature for Automated Protein Phenotype Prediction using PHENOstruct
MP Shahri, I Kahanda
International Conference on Bioinformatics and Computational Biology, 2018
52018
Propheno 1.0: An online dataset for accelerating the complete characterization of the human protein-phenotype landscape in biomedical literature
MP Shahri, I Kahanda
2020 IEEE 14th International Conference on Semantic Computing (ICSC), 416-423, 2020
32020
Pangenome-wide association studies with frequented regions
B Manuweera, J Mudge, I Kahanda, B Mumey, T Ramaraj, A Cleary
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
32019
PPPred: Classifying protein-phenotype co-mentions extracted from biomedical literature
M Pourreza Shahri, G Reynolds, MM Roe, I Kahanda
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
32019
Overview of the BioCreative VI text-mining services for Kinome Curation Track
J Gobeill, P Gaudet, D Dopp, A Morrone, I Kahanda, YY Hsu, CH Wei, ...
Database 2018, 2018
32018
KinDER: A Biocuration Tool for Extracting Kinase Knowledge from Biomedical Literature
D Dopp, A Morrone, I Kahanda
BioCreative VI Workshop, 2017
32017
DeepACPpred: A Novel Hybrid CNN-RNN Architecture for Predicting Anti-Cancer Peptides
N Lane, I Kahanda
International Conference on Practical Applications of Computational Biology …, 2020
22020
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Articles 1–20