Gordon D Pusch
Gordon D Pusch
Fellowship for Interpretation of Genomes
כתובת אימייל מאומתת בדומיין xnet.com
כותרת
צוטט על ידי
צוטט על ידי
שנה
The RAST Server: rapid annotations using subsystems technology
RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ...
BMC genomics 9 (1), 1-15, 2008
88092008
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ...
Nucleic acids research 42 (D1), D206-D214, 2014
29492014
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
19532005
The use of gene clusters to infer functional coupling
R Overbeek, M Fonstein, M D’souza, GD Pusch, N Maltsev
Proceedings of the National Academy of Sciences 96 (6), 2896-2901, 1999
15041999
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ...
Scientific reports 5 (1), 1-6, 2015
11362015
PATRIC, the bacterial bioinformatics database and analysis resource
AR Wattam, D Abraham, O Dalay, TL Disz, T Driscoll, JL Gabbard, ...
Nucleic acids research 42 (D1), D581-D591, 2014
9932014
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
N Ivanova, A Sorokin, I Anderson, N Galleron, B Candelon, V Kapatral, ...
Nature 423 (6935), 87-91, 2003
9212003
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
9112017
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus
A Bolotin, B Quinquis, P Renault, A Sorokin, SD Ehrlich, S Kulakauskas, ...
Nature biotechnology 22 (12), 1554-1558, 2004
5532004
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
R Overbeek, N Larsen, GD Pusch, M D’Souza, ES Jr, N Kyrpides, ...
Nucleic acids research 28 (1), 123-125, 2000
4832000
Phylogenetic conservatism of functional traits in microorganisms
AC Martiny, K Treseder, G Pusch
The ISME journal 7 (4), 830-838, 2013
3882013
Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586
V Kapatral, I Anderson, N Ivanova, G Reznik, T Los, A Lykidis, ...
Journal of bacteriology 184 (7), 2005-2018, 2002
3662002
The ERGO TM genome analysis and discovery system
R Overbeek, N Larsen, T Walunas, M D'Souza, G Pusch, E Selkov Jr, ...
Nucleic acids research 31 (1), 164-171, 2003
2672003
Use of contiguity on the chromosome to predict functional coupling
R Overbeek, M Fonstein, M D'Souza, GD Pusch, N Maltsev
In silico biology 1 (2), 93-108, 1999
2031999
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ...
PloS one 7 (10), e48053, 2012
1552012
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ...
Nucleic acids research 48 (D1), D606-D612, 2020
1152020
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
LK McNeil, C Reich, RK Aziz, D Bartels, M Cohoon, T Disz, RA Edwards, ...
Nucleic acids research 35 (suppl_1), D347-D353, 2007
1072007
Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis
I Anderson, A Sorokin, V Kapatral, G Reznik, A Bhattacharya, ...
FEMS Microbiology Letters 250 (2), 175-184, 2005
902005
High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource
SMD Seaver, S Gerdes, O Frelin, C Lerma-Ortiz, LMT Bradbury, R Zallot, ...
Proceedings of the National Academy of Sciences 111 (26), 9645-9650, 2014
732014
Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome …
R Boissy, A Ahmed, B Janto, J Earl, BG Hall, JS Hogg, GD Pusch, ...
BMC genomics 12 (1), 1-15, 2011
602011
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מאמרים 1–20