| Langevin stabilization of molecular dynamics JA Izaguirre, DP Catarello, JM Wozniak, RD Skeel The Journal of chemical physics 114 (5), 2090-2098, 2001 | 669 | 2001 |
| CompuCell, a multi-model framework for simulation of morphogenesis JA Izaguirre, R Chaturvedi, C Huang, T Cickovski, J Coffland, G Thomas, ... Bioinformatics 20 (7), 1129-1137, 2004 | 243 | 2004 |
| Longer time steps for molecular dynamics JA Izaguirre, S Reich, RD Skeel The Journal of chemical physics 110 (20), 9853-9864, 1999 | 227 | 1999 |
| An impulse integrator for Langevin dynamics RD Skeel, JA Izaguirre Molecular Physics 100 (24), 3885-3891, 2002 | 154 | 2002 |
| On multiscale approaches to three-dimensional modelling of morphogenesis R Chaturvedi, C Huang, B Kazmierczak, T Schneider, JA Izaguirre, ... Journal of the Royal Society interface 2 (3), 237-253, 2005 | 135 | 2005 |
| A framework for three-dimensional simulation of morphogenesis TM Cickovski, C Huang, R Chaturvedi, T Glimm, HGE Hentschel, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 273-288, 2005 | 131 | 2005 |
| ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics T Matthey, T Cickovski, S Hampton, A Ko, Q Ma, M Nyerges, T Raeder, ... ACM Transactions on Mathematical Software (TOMS) 30 (3), 237-265, 2004 | 128 | 2004 |
| A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis N Chen, JA Glazier, JA Izaguirre, MS Alber Computer physics communications 176 (11-12), 670-681, 2007 | 103 | 2007 |
| Shadow hybrid Monte Carlo: an efficient propagator in phase space of macromolecules JA Izaguirre, SS Hampton Journal of Computational Physics 200 (2), 581-604, 2004 | 100 | 2004 |
| Verlet-I/r-RESPA/Impulse is limited by nonlinear instabilities Q Ma, JA Izaguirre, RD Skeel SIAM Journal on Scientific Computing 24 (6), 1951-1973, 2003 | 94 | 2003 |
| Predicting protein-protein interactions from protein domains using a set cover approach C Huang, F Morcos, SP Kanaan, S Wuchty, DZ Chen, JA Izaguirre IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (1), 78-87, 2007 | 82 | 2007 |
| Work queue+ python: A framework for scalable scientific ensemble applications P Bui, D Rajan, B Abdul-Wahid, J Izaguirre, D Thain Workshop on python for high performance and scientific computing at sc11, 2011 | 81 | 2011 |
| From genes to organisms via the cell: a problem-solving environment for multicellular development T Cickovski, K Aras, MS Alber, JA Izaguirre, M Swat, JA Glazier, ... Computing in science & engineering 9 (4), 50-60, 2007 | 63 | 2007 |
| Converting a high performance application to an elastic cloud application D Rajan, A Canino, JA Izaguirre, D Thain 2011 IEEE Third International Conference on Cloud Computing Technology and …, 2011 | 61 | 2011 |
| Modeling conformational ensembles of slow functional motions in Pin1-WW F Morcos, S Chatterjee, CL McClendon, PR Brenner, R López-Rendón, ... PLoS Comput Biol 6 (12), e1001015, 2010 | 60 | 2010 |
| Accelerating the replica exchange method through an efficient all-pairs exchange P Brenner, CR Sweet, D VonHandorf, JA Izaguirre The Journal of chemical physics 126 (7), 074103, 2007 | 58 | 2007 |
| BioCoRE: A collaboratory for structural biology M Bhandarkar, G Budescu, WF Humphrey, JA Izaguirre, S Izrailev, ... Simulation Series 31, 242-251, 1999 | 58 | 1999 |
| Parallel multigrid summation for the N-body problem JA Izaguirre, SS Hampton, T Matthey Journal of Parallel and Distributed Computing 65 (8), 949-962, 2005 | 52 | 2005 |
| Targeted mollified impulse: A multiscale stochastic integrator for long molecular dynamics simulations Q Ma, JA Izaguirre Multiscale Modeling & Simulation 2 (1), 1-21, 2003 | 44 | 2003 |
| Normal mode partitioning of Langevin dynamics for biomolecules CR Sweet, P Petrone, VS Pande, JA Izaguirre The Journal of chemical physics 128 (14), 04B606, 2008 | 41 | 2008 |
Justin M WozniakComputer Scientist, Argonne National LaboratoryVerified email at mcs.anl.gov
