Harm van Bakel
Harm van Bakel
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Determination and inference of eukaryotic transcription factor sequence specificity
MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ...
Cell 158 (6), 1431-1443, 2014
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
L Franke, H Van Bakel, L Fokkens, ED De Jong, M Egmont-Petersen, ...
The American Journal of Human Genetics 78 (6), 1011-1025, 2006
Most “dark matter” transcripts are associated with known genes
H Van Bakel, C Nislow, BJ Blencowe, TR Hughes
PLoS Biol 8 (5), e1000371, 2010
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ...
Molecular cell 32 (6), 878-887, 2008
The draft genome and transcriptome of Cannabis sativa
H Van Bakel, JM Stout, AG Cote, CM Tallon, AG Sharpe, TR Hughes, ...
Genome biology 12 (10), 1-18, 2011
Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder
MJ Gandal, P Zhang, E Hadjimichael, RL Walker, C Chen, S Liu, H Won, ...
Science 362 (6420), 2018
Characterization of the human ESC transcriptome by hybrid sequencing
KF Au, V Sebastiano, PT Afshar, JD Durruthy, L Lee, BA Williams, ...
Proceedings of the National Academy of Sciences 110 (50), E4821-E4830, 2013
Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets
J van de Peppel, N Kettelarij, H van Bakel, TTJP Kockelkorn, ...
Molecular cell 19 (4), 511-522, 2005
Monitoring global messenger RNA changes in externally controlled microarray experiments
J van de Peppel, P Kemmeren, H van Bakel, M Radonjic, D van Leenen, ...
EMBO reports 4 (4), 387-393, 2003
Introductions and early spread of SARS-CoV-2 in the New York City area
AS Gonzalez-Reiche, MM Hernandez, MJ Sullivan, B Ciferri, ...
Science 369 (6501), 297-301, 2020
Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors
P Kemmeren, K Sameith, LAL Van De Pasch, JJ Benschop, TL Lenstra, ...
Cell 157 (3), 740-752, 2014
Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis
BRG Gordon, Y Li, L Wang, A Sintsova, H Van Bakel, S Tian, WW Navarre, ...
Proceedings of the National Academy of Sciences 107 (11), 5154-5159, 2010
The psychencode project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
Origins of the 2009 H1N1 influenza pandemic in swine in Mexico
I Mena, MI Nelson, F Quezada-Monroy, J Dutta, R Cortes-Fernández, ...
Elife 5, e16777, 2016
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
MB Stead, S Marshburn, BK Mohanty, J Mitra, LP Castillo, D Ray, ...
Nucleic acids research 39 (8), 3188-3203, 2011
A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription
H van Bakel, K Tsui, M Gebbia, S Mnaimneh, TR Hughes, C Nislow
PLoS Genet 9 (5), e1003479, 2013
Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays
KN Lam, H Van Bakel, AG Cote, A Van Der Ven, TR Hughes
Nucleic acids research 39 (11), 4680-4690, 2011
Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression
J Fillingham, P Kainth, JP Lambert, H van Bakel, K Tsui, L Peña-Castillo, ...
Molecular cell 35 (3), 340-351, 2009
Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation
A Rialdi, L Campisi, N Zhao, AC Lagda, C Pietzsch, JSY Ho, ...
Science 352 (6289), 2016
Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism
H van Bakel, E Strengman, C Wijmenga, FCP Holstege
Physiological genomics 22 (3), 356-367, 2005
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