Harnessing connectivity in a large-scale small-molecule sensitivity dataset B Seashore-Ludlow, MG Rees, JH Cheah, M Cokol, EV Price, ME Coletti, ... Cancer discovery 5 (11), 1210-1223, 2015 | 641 | 2015 |
Efficient measurement and factorization of high-order drug interactions in Mycobacterium tuberculosis M Cokol, N Kuru, E Bicak, J Larkins-Ford, BB Aldridge Science advances 3 (10), e1701881, 2017 | 120 | 2017 |
Prediction of antibiotic interactions using descriptors derived from molecular structure DJ Mason, I Stott, S Ashenden, ZB Weinstein, I Karakoc, S Meral, N Kuru, ... Journal of medicinal chemistry 60 (9), 3902-3912, 2017 | 42 | 2017 |
Modeling the impact of drug interactions on therapeutic selectivity ZB Weinstein, N Kuru, S Kiriakov, AC Palmer, AS Khalil, PA Clemons, ... Nature communications 9 (1), 3452, 2018 | 24 | 2018 |
Efficient measurement and factorization of high-order drug interactions in Mycobacterium tuberculosis. Sci Adv 3: e1701881 M Cokol, N Kuru, E Bicak, J Larkins-Ford, BB Aldridge | 19 | 2017 |
Differentially private accelerated optimization algorithms N Kuru, S Ilker Birbil, M Gurbuzbalaban, S Yildirim SIAM Journal on Optimization 32 (2), 795-821, 2022 | 15 | 2022 |
Harnessing connectivity in a large-scale small-molecule sensitivity dataset. Cancer Discov. 5, 1210–1223 B Seashore-Ludlow, MG Rees, JH Cheah, M Cokol, EV Price, ME Coletti, ... | 10 | 2015 |
Harnessing connectivity in a large-scale small-molecule sensitivity dataset. Cancer Discov. 2015; 5: 1210–23 B Seashore-Ludlow, MG Rees, JH Cheah, M Cokol, EV Price, ME Coletti, ... | 5 | |
PHACT: Phylogeny-aware computing of tolerance for missense mutations N Kuru, O Dereli, E Akkoyun, A Bircan, O Tastan, O Adebali Molecular Biology and Evolution 39 (6), msac114, 2022 | 4 | 2022 |
A framework for parallel second order incremental optimization algorithms for solving partially separable problems K Kaya, F Öztoprak, Şİ Birbil, AT Cemgil, U Şimşekli, N Kuru, H Koptagel, ... Computational Optimization and Applications 72, 675-705, 2019 | 3 | 2019 |
Evolutionary history of Calcium-sensing receptors sheds light into hyper/hypocalcemia-causing mutations A Bircan, N Kuru, O Dereli, O Adebali bioRxiv, 2023.06. 11.544489, 2023 | 1 | 2023 |
HAMSI: A Parallel Incremental Optimization Algorithm Using Quadratic Approximations for Solving Partially Separable Problems K Kaya, F Öztoprak, Şİ Birbil, AT Cemgil, U Şimşekli, N Kuru, H Koptagel, ... arXiv preprint arXiv:1509.01698, 2015 | 1 | 2015 |
PHACTboost predictions N Kuru, O Dereli, E Akkoyun, A Bircan, O Tastan, O Adebali | | 2024 |
PHACTboost: A Phylogeny-aware Boosting Algorithm to Compute the Pathogenicity of Missense Mutations O Dereli, N Kuru, E Akkoyun, A Bircan, O Tastan, O Adebali bioRxiv, 2024.01. 30.577938, 2024 | | 2024 |
[DATASET] PHACT: Phylogeny-Aware Computing of Tolerance for Missense Mutations N Kuru, O Dereli, E Akkoyun, A Bircan, O Tastan, O Adebali | | 2022 |
Reproducible and scalable data analysis on high performance computing E Akkoyun, N Kuru, O Dereli, A Bircan, Ö Taştan, O Adebali 15th International Symposium on Health Informatics and Bioinformatics HIBIT …, 2022 | | 2022 |
A novel phylogeny-dependent coevolution algorithm N Kuru, O Adebali 15th International Symposium on Health Informatics and Bioinformatics HIBIT …, 2022 | | 2022 |
Phylostat: a web-based tool to analyze paralogous clade divergencein phylogenetic trees E Özçelik, N Kuru, O Adebali Turkish Journal of Biology 45 (6), 667-673, 2021 | | 2021 |
Novel gradient-based methods for data distribution and privacy in data science N Kuru | | 2019 |
Synergy and selectivity of antifungal small molecule combinations Z Weinstein, N Kuru, P Clemons, F Roth, M Çokol The FASEB Journal 29, 773.13, 2015 | | 2015 |