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Alejandro J. Brenes
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The cytotoxic T cell proteome and its shaping by the kinase mTOR
JL Hukelmann, KE Anderson, LV Sinclair, KM Grzes, AB Murillo, ...
Nature immunology 17 (1), 104-112, 2016
2322016
Quantitative analysis of T cell proteomes and environmental sensors during T cell differentiation
AJM Howden, JL Hukelmann, A Brenes, L Spinelli, LV Sinclair, ...
Nature immunology 20 (11), 1542-1554, 2019
1582019
Antigen receptor control of methionine metabolism in T cells
LV Sinclair, AJM Howden, A Brenes, L Spinelli, JL Hukelmann, ...
Elife 8, e44210, 2019
1492019
Multibatch TMT reveals false positives, batch effects and missing values
A Brenes, J Hukelmann, D Bensaddek, AI Lamond
Molecular & Cellular Proteomics 18 (10), 1967-1980, 2019
1342019
Deep proteome analysis identifies age-related processes in C. elegans
V Narayan, T Ly, E Pourkarimi, AB Murillo, A Gartner, AI Lamond, ...
Cell systems 3 (2), 144-159, 2016
1042016
Global membrane protein interactome analysis using in vivo crosslinking and mass spectrometry-based protein correlation profiling
M Larance, KJ Kirkwood, M Tinti, AB Murillo, MAJ Ferguson, AI Lamond
Molecular & Cellular Proteomics 15 (7), 2476-2490, 2016
702016
Proteomic analysis of cell cycle progression in asynchronous cultures, including mitotic subphases, using PRIMMUS
T Ly, A Whigham, R Clarke, AJ Brenes-Murillo, B Estes, D Madhessian, ...
Elife 6, e27574, 2017
672017
Population-scale proteome variation in human induced pluripotent stem cells
BA Mirauta, DD Seaton, D Bensaddek, A Brenes, MJ Bonder, H Kilpinen, ...
Elife 9, e57390, 2020
552020
Multi-omics analyses of starvation responses reveal a central role for lipoprotein metabolism in acute starvation survival in C. elegans
EB Harvald, RR Sprenger, KB Dall, CS Ejsing, R Nielsen, S Mandrup, ...
Cell systems 5 (1), 38-52. e4, 2017
532017
Nrf2 activation reprograms macrophage intermediary metabolism and suppresses the type I interferon response
DG Ryan, EV Knatko, AM Casey, JL Hukelmann, SD Naidu, AJ Brenes, ...
Iscience 25 (2), 2022
502022
A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS
L Reyes, MA Sanchez-Garcia, T Morrison, AJM Howden, ER Watts, ...
Wellcome open research 6, 2021
43*2021
Global proteomics analysis of the response to starvation in C. elegans
M Larance, E Pourkarimi, B Wang, AB Murillo, R Kent, AI Lamond, ...
Molecular & Cellular Proteomics 14 (7), 1989-2001, 2015
422015
Micro‐proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm level
D Bensaddek, V Narayan, A Nicolas, A Brenes Murillo, A Gartner, ...
Proteomics 16 (3), 381-392, 2016
322016
Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome
AJ Brenes, H Yoshikawa, D Bensaddek, B Mirauta, D Seaton, ...
Cell reports 35 (4), 2021
272021
Proteome-wide analysis of protein abundance and turnover remodelling during oncogenic transformation of human breast epithelial cells
T Ly, A Endo, A Brenes, M Gierlinski, V Afzal, A Pawellek, AI Lamond
Wellcome open research 3, 2018
272018
The Encyclopedia of Proteome Dynamics: a big data ecosystem for (prote) omics
A Brenes, V Afzal, R Kent, AI Lamond
Nucleic Acids Research 46 (D1), D1202-D1209, 2018
212018
The immunological proteome resource
AJ Brenes, AI Lamond, DA Cantrell
Nature Immunology 24 (5), 731-731, 2023
182023
Tissue environment, not ontogeny, defines murine intestinal intraepithelial T lymphocytes
AJ Brenes, M Vandereyken, OJ James, H Watt, J Hukelmann, L Spinelli, ...
Elife 10, e70055, 2021
162021
Comparative genetic, proteomic and phosphoproteomic analysis of C. elegans embryos with a focus on ham-1/STOX and pig-1/MELK in dopaminergic neuron …
SL Offenburger, D Bensaddek, AB Murillo, AI Lamond, A Gartner
Scientific reports 7 (1), 4314, 2017
132017
The encyclopedia of proteome dynamics: The KinoViewer
A Brenes, AI Lamond
Bioinformatics 35 (8), 1441-1442, 2019
92019
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