עקוב אחר
Se Jin Song
Se Jin Song
University of California San Diego
כתובת אימייל מאומתת בדומיין ucsd.edu
כותרת
צוטט על ידי
צוטט על ידי
שנה
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2‏
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...‏
Nature biotechnology 37 (8), 852-857, 2019‏
133182019
The treatment-naive microbiome in new-onset Crohn’s disease‏
D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ...‏
Cell host & microbe 15 (3), 382-392, 2014‏
32332014
A communal catalogue reveals Earth’s multiscale microbial diversity‏
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...‏
Nature 551 (7681), 457-463, 2017‏
21922017
Cohabiting family members share microbiota with one another and with their dogs‏
SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ...‏
elife 2, e00458, 2013‏
11562013
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer‏
MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ...‏
Nature medicine 22 (3), 250-253, 2016‏
10392016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science‏
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...‏
PeerJ Preprints, 2018‏
9262018
The microbiome of uncontacted Amerindians‏
JC Clemente, EC Pehrsson, MJ Blaser, K Sandhu, Z Gao, B Wang, ...‏
Science advances 1 (3), e1500183, 2015‏
8872015
Microbiome analyses of blood and tissues suggest cancer diagnostic approach‏
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...‏
Nature 579 (7800), 567-574, 2020‏
7982020
American gut: an open platform for citizen science microbiome research‏
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...‏
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018‏
6532018
Advancing our understanding of the human microbiome using QIIME‏
JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ...‏
Methods in enzymology 531, 371-444, 2013‏
6362013
Microbial community assembly and metabolic function during mammalian corpse decomposition‏
JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ...‏
Science 351 (6269), 158-162, 2016‏
4892016
The human microbiome in evolution‏
ER Davenport, JG Sanders, SJ Song, KR Amato, AG Clark, R Knight‏
BMC biology 15, 1-12, 2017‏
3842017
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies‏
SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight‏
MSystems 1 (3), 10.1128/msystems. 00021-16, 2016‏
3732016
The effects of captivity on the mammalian gut microbiome‏
VJ McKenzie, SJ Song, F Delsuc, TL Prest, AM Oliverio, TM Korpita, ...‏
Integrative and comparative biology 57 (4), 690-704, 2017‏
3562017
Convergence of gut microbiomes in myrmecophagous mammals‏
F Delsuc, JL Metcalf, L Wegener Parfrey, SJ Song, A González, R Knight‏
Molecular ecology 23 (6), 1301-1317, 2014‏
3262014
From superspreaders to disease hotspots: linking transmission across hosts and space‏
SH Paull, S Song, KM McClure, LC Sackett, AM Kilpatrick, PTJ Johnson‏
Frontiers in Ecology and the Environment 10 (2), 75-82, 2012‏
3152012
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes‏
KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ...‏
The ISME journal 13 (3), 576-587, 2019‏
2602019
The bee microbiome: impact on bee health and model for evolution and ecology of host-microbe interactions‏
P Engel, WK Kwong, Q McFrederick, KE Anderson, SM Barribeau, ...‏
MBio 7 (2), 10.1128/mbio. 02164-15, 2016‏
2532016
Learning representations of microbe–metabolite interactions‏
JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ...‏
Nature methods 16 (12), 1306-1314, 2019‏
2352019
Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats‏
SJ Song, JG Sanders, F Delsuc, J Metcalf, K Amato, MW Taylor, F Mazel, ...‏
MBio 11 (1), 10.1128/mbio. 02901-19, 2020‏
2272020
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מאמרים 1–20