Gary Kapral
Gary Kapral
Verified email at duke.edu
Title
Cited by
Cited by
Year
PHENIX: a comprehensive Python-based system for macromolecular structure solution
PD Adams, PV Afonine, G Bunkóczi, VB Chen, IW Davis, N Echols, ...
Acta Crystallographica Section D: Biological Crystallography 66 (2), 213-221, 2010
177452010
MolProbity: all-atom structure validation for macromolecular crystallography
VB Chen, WB Arendall, JJ Headd, DA Keedy, RM Immormino, GJ Kapral, ...
Acta Crystallographica Section D: Biological Crystallography 66 (1), 12-21, 2010
96542010
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
IW Davis, A Leaver-Fay, VB Chen, JN Block, GJ Kapral, X Wang, ...
Nucleic acids research 35 (suppl_2), W375-W383, 2007
36672007
The Phenix software for automated determination of macromolecular structures
PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ...
Methods 55 (1), 94-106, 2011
6272011
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
JA Dunkle, L Wang, MB Feldman, A Pulk, VB Chen, GJ Kapral, J Noeske, ...
Science 332 (6032), 981-984, 2011
3422011
RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)
JS Richardson, B Schneider, LW Murray, GJ Kapral, RM Immormino, ...
Rna 14 (3), 465-481, 2008
2692008
The other 90% of the protein: Assessment beyond the Cαs for CASP8 template‐based and high‐accuracy models
DA Keedy, CJ Williams, JJ Headd, WB Arendall III, VB Chen, GJ Kapral, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 29-49, 2009
902009
adams
JF Adams
611882
Amiloride as a new RNA-binding scaffold with activity against HIV-1 TAR
NN Patwardhan, LR Ganser, GJ Kapral, CS Eubanks, J Lee, ...
MedChemComm 8 (5), 1022-1036, 2017
482017
Small molecule-based pattern recognition to classify RNA structure
CS Eubanks, JE Forte, GJ Kapral, AE Hargrove
Journal of the American Chemical Society 139 (1), 409-416, 2017
332017
New tools provide a second look at HDV ribozyme structure, dynamics and cleavage
GJ Kapral, S Jain, J Noeske, JA Doudna, DC Richardson, JS Richardson
Nucleic acids research 42 (20), 12833-12846, 2014
332014
RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone
X Wang, G Kapral, L Murray, D Richardson, J Richardson, J Snoeyink
Journal of mathematical biology 56 (1), 253-278, 2008
292008
WB 3rd Arendall, J. Snoeyink, JS Richardson, DC Richardson
IW Davis, A Leaver-Fay, VB Chen, JN Block, GJ Kapral, X Wang, ...
Nucl. Acids Res 35, W375-W383, 2007
112007
Black sheep among the flock of protein structures
Z Dauter, EN Baker
Acta Crystallographica Section D: Biological Crystallography 66 (1), 1-1, 2010
92010
TEMPLATE BASED ASSESSMENT
DA Keedy, CJ Williams, JJ Headd, WB Arendall III, VB Chen, GJ Kapral, ...
Proteins 77 (9), 29-49, 2009
12009
Pattern recognition classification of RNA secondary structure and topology
C Eubanks, J Forte, G Kapral, A Hargrove
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Rna backbone validation, correction, and implications for rna-protein interfaces
G Kapral
Duke University, 2013
2013
Validation analyses
VB Chen, WB Arendall, JJ Headd, DA Keedy, RM Immormino, GJ Kapral, ...
International Union of Crystallography, 2012
2012
Global versus local, absolute versus comparative
VB Chen, WB Arendall, JJ Headd, DA Keedy, RM Immormino, GJ Kapral, ...
International Union of Crystallography, 2012
2012
Correction of outliers
VB Chen, WB Arendall, JJ Headd, DA Keedy, RM Immormino, GJ Kapral, ...
International Union of Crystallography, 2012
2012
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Articles 1–20