| Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin A Tomita, T Sato, K Ichiyanagi, S Nozawa, H Ichikawa, M Chollet, F Kawai, ... Proceedings of the National Academy of Sciences 106 (8), 2612-2616, 2009 | 132 | 2009 |
| Molecular dynamics of a 15-residue poly (L-alanine) in water: helix formation and energetics M Takano, T Yamato, J Higo, A Suyama, K Nagayama Journal of the American Chemical Society 121 (4), 605-612, 1999 | 103 | 1999 |
| Energy transfer pathways relevant for long-range intramolecular signaling of photosensory protein revealed by microscopic energy conductivity analysis T Ishikura, T Yamato Chemical physics letters 432 (4-6), 533-537, 2006 | 75 | 2006 |
| Conformational deformation in deoxymyoglobin by hydrostatic pressure T Yamato, J Higo, Y Seno, N Gō Proteins: Structure, Function, and Bioinformatics 16 (4), 327-340, 1993 | 74 | 1993 |
| Theory of excitation energy transfer in the intermediate coupling case. II. Criterion for intermediate coupling excitation energy transfer mechanism and application to the … A Kimura, T Kakitani, T Yamato The Journal of Physical Chemistry B 104 (39), 9276-9287, 2000 | 67 | 2000 |
| Destructive interference in the electron tunneling through protein media T Kawatsu, T Kakitani, T Yamato The Journal of Physical Chemistry B 106 (43), 11356-11366, 2002 | 59 | 2002 |
| Novel method to detect a motif of local structures in different protein conformations. H Wako, T Yamato Protein engineering 11 (11), 981-990, 1998 | 57 | 1998 |
| Energy exchange network of inter‐residue interactions within a thermally fluctuating protein molecule: a computational study T Ishikura, Y Iwata, T Hatano, T Yamato Journal of Computational Chemistry 36 (22), 1709-1718, 2015 | 47 | 2015 |
| Role of protein in the primary step of the photoreaction of yellow protein A Yamada, T Ishikura, T Yamato PROTEINS: Structure, Function, and Bioinformatics 55 (4), 1063-1069, 2004 | 46 | 2004 |
| Interference, fluctuation, and alternation of electron tunneling in protein media. 1. Two tunneling routes in photosynthetic reaction center alternate due to thermal … H Nishioka, A Kimura, T Yamato, T Kawatsu, T Kakitani The Journal of Physical Chemistry B 109 (5), 1978-1987, 2005 | 39 | 2005 |
| A computational study on the stability of the protonated Schiff base of retinal in rhodopsin A Yamada, T Kakitani, S Yamamoto, T Yamato Chemical physics letters 366 (5-6), 670-675, 2002 | 34 | 2002 |
| Mapping energy transport networks in proteins DM Leitner, T Yamato Rev. Comp. Chem 31, 63-114, 2018 | 33 | 2018 |
| Interference, fluctuation, and alternation of electron tunneling in protein media. 2. Non-Condon theory for the energy gap dependence of electron transfer rate H Nishioka, A Kimura, T Yamato, T Kawatsu, T Kakitani The Journal of Physical Chemistry B 109 (32), 15621-15635, 2005 | 33 | 2005 |
| Worm model for electron tunneling in proteins: Consolidation of the pathway model and the Dutton plot T Kawatsu, T Kakitani, T Yamato The Journal of Physical Chemistry B 105 (19), 4424-4435, 2001 | 32 | 2001 |
| Mechanical property of a TIM‐barrel protein N Kobayashi, T Yamato, N Go Proteins: Structure, Function, and Bioinformatics 28 (1), 109-116, 1997 | 32 | 1997 |
| Scaling of rates of vibrational energy transfer in proteins with equilibrium dynamics and entropy KM Reid, T Yamato, DM Leitner The Journal of Physical Chemistry B 122 (40), 9331-9339, 2018 | 31 | 2018 |
| Ab initio MO study on potential energy surfaces for twisting around C7 C8 and C4–C7 bonds of coumaric acid A Yamada, S Yamamoto, T Yamato, T Kakitani Journal of Molecular Structure: THEOCHEM 536 (2-3), 195-201, 2001 | 31 | 2001 |
| Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue Y Miyazawa, H Nishioka, K Yura, T Yamato Biophysical Journal 94 (6), 2194-2203, 2008 | 28 | 2008 |
| On the anomaly of the tunneling matrix element in long-range electron transfer T Kawatsu, T Kakitani, T Yamato The Journal of Physical Chemistry B 106 (19), 5068-5074, 2002 | 27 | 2002 |
| Molecular dynamics study of femtosecond events in photoactive yellow protein after photoexcitation of the chromophore T Yamato, N Niimura, N Go Proteins: Structure, Function, and Bioinformatics 32 (3), 268-275, 1998 | 27 | 1998 |
