Yunjiang Qiu
Yunjiang Qiu
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A compendium of chromatin contact maps reveals spatially active regions in the human genome
AD Schmitt, M Hu, I Jung, Z Xu, Y Qiu, CL Tan, Y Li, S Lin, Y Lin, CL Barr, ...
Cell reports 17 (8), 2042-2059, 2016
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
Integrative analysis of haplotype-resolved epigenomes across human tissues
D Leung, I Jung, N Rajagopal, A Schmitt, S Selvaraj, AY Lee, CA Yen, ...
Nature 518 (7539), 350-354, 2015
Epigenetic priming of enhancers predicts developmental competence of hESC-derived endodermal lineage intermediates
A Wang, F Yue, Y Li, R Xie, T Harper, NA Patel, K Muth, J Palmer, Y Qiu, ...
Cell stem cell 16 (4), 386-399, 2015
A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells
Y Diao, R Fang, B Li, Z Meng, J Yu, Y Qiu, KC Lin, H Huang, T Liu, ...
Nature methods 14 (6), 629-635, 2017
RAP2 mediates mechanoresponses of the Hippo pathway
Z Meng, Y Qiu, KC Lin, A Kumar, JK Placone, C Fang, KC Wang, S Lu, ...
Nature 560 (7720), 655-660, 2018
The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell
SW Plouffe, KC Lin, JL Moore, FE Tan, S Ma, Z Ye, Y Qiu, B Ren, KL Guan
Journal of Biological Chemistry 293 (28), 11230-11240, 2018
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers
J Yan, SAA Chen, A Local, T Liu, Y Qiu, KM Dorighi, S Preissl, CM Rivera, ...
Cell research 28 (2), 204-220, 2018
Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells
Y Zhang, T Li, S Preissl, ML Amaral, JD Grinstein, EN Farah, E Destici, ...
Nature genetics 51 (9), 1380-1388, 2019
An atlas of dynamic chromatin landscapes in mouse fetal development
DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang, AY Lee, B Li, J Chiou, ...
Nature 583 (7818), 744-751, 2020
Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase
L Patel, R Kang, SC Rosenberg, Y Qiu, R Raviram, S Chee, R Hu, B Ren, ...
Nature structural & molecular biology 26 (3), 164-174, 2019
Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk
WW Greenwald, J Chiou, J Yan, Y Qiu, N Dai, A Wang, N Nariai, ...
Nature communications 10 (1), 1-12, 2019
MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
I Juric, M Yu, A Abnousi, R Raviram, R Fang, Y Zhao, Y Zhang, Y Qiu, ...
PLoS computational biology 15 (4), e1006982, 2019
Common DNA sequence variation influences 3-dimensional conformation of the human genome
DU Gorkin, Y Qiu, M Hu, K Fletez-Brant, T Liu, AD Schmitt, A Noor, ...
Genome biology 20 (1), 1-25, 2019
Single-cell chromatin accessibility identifies pancreatic islet cell type–and state-specific regulatory programs of diabetes risk
J Chiou, C Zeng, Z Cheng, JY Han, M Schlichting, M Miller, R Mendez, ...
Nature Genetics 53 (4), 455-466, 2021
A common set of distinct features that characterize noncoding RNAs across multiple species
L Hu, C Di, M Kai, YCT Yang, Y Li, Y Qiu, X Hu, KY Yip, MQ Zhang, ZJ Lu
Nucleic acids research 43 (1), 104-114, 2015
An atlas of gene regulatory elements in adult mouse cerebrum
YE Li, S Preissl, X Hou, Z Zhang, K Zhang, R Fang, Y Qiu, O Poirion, B Li, ...
BioRxiv, 2020
Systematic analysis of binding of transcription factors to noncoding variants
J Yan, Y Qiu, AMR Dos Santos, Y Yin, YE Li, N Vinckier, N Nariai, ...
Nature 591 (7848), 147-151, 2021
FIREcaller: Detecting frequently interacting regions from Hi-C data
C Crowley, Y Yang, Y Qiu, B Hu, A Abnousi, J Lipiński, D Plewczyński, ...
Computational and structural biotechnology journal 19, 355-362, 2021
Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development
RJ Geusz, A Wang, J Chiou, JJ Lancman, N Wetton, S Kefalopoulou, ...
Elife 10, e59067, 2021
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