| Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 8356 | 2012 |
| A framework for human microbiome research nature 486 (7402), 215-221, 2012 | 1960 | 2012 |
| Minimus: a fast, lightweight genome assembler DD Sommer, AL Delcher, SL Salzberg, M Pop BMC bioinformatics 8 (1), 1-11, 2007 | 510 | 2007 |
| Deep sequencing of the oral microbiome reveals signatures of periodontal disease B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ... PloS one 7 (6), e37919, 2012 | 405 | 2012 |
| Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ... BMC genomics 9 (1), 1-16, 2008 | 387 | 2008 |
| Next generation sequence assembly with AMOS TJ Treangen, DD Sommer, FE Angly, S Koren, M Pop Current Protocols in Bioinformatics 33 (1), 11.8. 1-11.8. 18, 2011 | 226 | 2011 |
| Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp AJ Bogdanove, R Koebnik, H Lu, A Furutani, SV Angiuoli, PB Patil, ... Journal of bacteriology 193 (19), 5450-5464, 2011 | 203 | 2011 |
| MetAMOS: a modular and open source metagenomic assembly and analysis pipeline TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, ... Genome biology 14 (1), 1-20, 2013 | 200 | 2013 |
| Genomic characterization of the Yersinia genus PE Chen, C Cook, AC Stewart, N Nagarajan, DD Sommer, M Pop, ... Genome biology 11 (1), 1-18, 2010 | 112 | 2010 |
| Comprehensive DNA signature discovery and validation AM Phillippy, JA Mason, K Ayanbule, DD Sommer, E Taviani, A Huq, ... PLoS computational biology 3 (5), e98, 2007 | 89 | 2007 |
| Gene-boosted assembly of a novel bacterial genome from very short reads SL Salzberg, DD Sommer, D Puiu, VT Lee PLoS Computational Biology 4 (9), e1000186, 2008 | 72 | 2008 |
| Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies MC Schatz, AM Phillippy, DD Sommer, AL Delcher, D Puiu, G Narzisi, ... Briefings in bioinformatics 14 (2), 213-224, 2013 | 59 | 2013 |
| Genome Sequence of the Wolbachia Endosymbiont of Culex quinquefasciatus JHB SL Salzberg, D Puiu, DD Sommer, V Nene, NH Lee Journal of bacteriology 191 (5), 1725-1725, 2009 | 57 | 2009 |
| De novo likelihood-based measures for comparing genome assemblies M Ghodsi, CM Hill, I Astrovskaya, H Lin, DD Sommer, S Koren, M Pop BMC research notes 6 (1), 1-18, 2013 | 55 | 2013 |
| De novo assembly of large genomes using cloud computing MC Schatz, D Sommer, D Kelley, M Pop Proceedings of the Cold Spring Harbor Biology of Genomes Conference, 2010 | 52 | 2010 |
| Biological sexing of a 4000-year-old Egyptian mummy head to assess the potential of nuclear DNA recovery from the most damaged and limited forensic specimens O Loreille, S Ratnayake, AL Bazinet, TB Stockwell, DD Sommer, ... Genes 9 (3), 135, 2018 | 33 | 2018 |
| MetAMOS: a metagenomic assembly and analysis pipeline for AMOS TJ Treangen, S Koren, I Astrovskaya, D Sommer, B Liu, M Pop Genome Biology 12 (1), 1-25, 2011 | 17 | 2011 |
| BLAST-based validation of metagenomic sequence assignments AL Bazinet, BD Ondov, DD Sommer, S Ratnayake PeerJ 6, e4892, 2018 | 11 | 2018 |
| Sequence-based predictions of lipooligosaccharide diversity in the Neisseriaceae and their implication in pathogenicity DC Stein, CJ Miller, SV Bhoopalan, DD Sommer PLoS One 6 (4), e18923, 2011 | 7 | 2011 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6 (1), 1-10, 2018 | 5 | 2018 |
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerified email at umd.edu
