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Shanika L. Amarasinghe
Shanika L. Amarasinghe
Other namesShani Amarasinghe
Postdoctoral Research Fellow, Biomedicine Discovery Institute, Monash University
Verified email at monash.edu - Homepage
Title
Cited by
Cited by
Year
Opportunities and challenges in long-read sequencing data analysis
SL Amarasinghe, S Su, X Dong, L Zappia, ME Ritchie, Q Gouil
Genome biology 21 (1), 30, 2020
11872020
Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing
L Tian, JS Jabbari, R Thijssen, Q Gouil, SL Amarasinghe, O Voogd, ...
Genome biology 22, 1-24, 2021
1022021
long-read-tools. org: an interactive catalogue of analysis methods for long-read sequencing data
SL Amarasinghe, ME Ritchie, Q Gouil
GigaScience 10 (2), giab003, 2021
252021
Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures
X Dong, MRM Du, Q Gouil, L Tian, JS Jabbari, R Bowden, PL Baldoni, ...
Nature Methods 20 (11), 1810-1821, 2023
202023
The evolutionary origin of CIPK16: A gene involved in enhanced salt tolerance
S Amarasinghe, NS Watson-Haigh, M Gilliham, S Roy, U Baumann
Molecular Phylogenetics and Evolution 100, 135-147, 2016
162016
Arginine-rich C9ORF72 ALS proteins stall ribosomes in a manner distinct from a canonical ribosome-associated quality control substrate
V Kriachkov, AR Ormsby, EP Kusnadi, HEG McWilliam, JD Mintern, ...
Journal of Biological Chemistry 299 (1), 2023
112023
A specialized tyrosine-based endocytosis signal in MR1 controls antigen presentation to MAIT cells
HJ Lim, JM Wubben, CP Garcia, S Cruz-Gomez, J Deng, JYW Mak, ...
Journal of Cell Biology 221 (12), e202110125, 2022
62022
Transcriptional variation is associated with differences in shoot sodium accumulation in distinct barley varieties
SL Amarasinghe, NS Watson-Haigh, C Byrt, R James, J Qiu, O Berkowitz, ...
Environmental and experimental botany 166, 103812, 2019
52019
Conserved regions of Plasmodium vivax potential vaccine candidate antigens in Sri Lanka: conscious in silico analysis of prospective conformational epitope regions
S Amarasinghe, H Kathriarachchi, P Udagama
Asian Pacific journal of tropical medicine 7 (10), 832-840, 2014
52014
AtCIPK16 mediates salt stress potentially through phytohormones and transcription factors
SL Amarasinghe, W Huang, NS Watson-Haigh, M Gilliham, SJ Roy, ...
BioRxiv, 2020.02. 17.953216, 2020
42020
scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor
SL Amarasinghe, P Yang, O Voogd, H Yang, MRM Du, S Su, DV Brown, ...
NAR Genomics and Bioinformatics 5 (4), lqad105, 2023
2023
Compensatory growth and recovery of tissue cytoarchitecture after transient cartilage-specific cell death in foetal mouse limbs
CH H’ng, SL Amarasinghe, B Zhang, H Chang, DR Powell, ...
bioRxiv, 2023.06. 20.545035, 2023
2023
Defining Transcriptional Networks Associated with Plant Salinity Tolerance
SL Amarasinghe
2018
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Articles 1–13