Mohammad Fallahi-Sichani
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Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
I Tirosh, B Izar, SM Prakadan, MH Wadsworth, D Treacy, JJ Trombetta, ...
Science 352 (6282), 189-196, 2016
Highly multiplexed imaging of single cells using a high-throughput cyclic immunofluorescence method
JR Lin, M Fallahi-Sichani, PK Sorger
Nature communications 6 (1), 8390, 2015
The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations
AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ...
Cell systems 6 (1), 13-24, 2018
Metrics other than potency reveal systematic variation in responses to cancer drugs
M Fallahi-Sichani, S Honarnejad, LM Heiser, JW Gray, PK Sorger
Nature chemical biology 9 (11), 708-714, 2013
Adaptive resistance of melanoma cells to RAF inhibition via reversible induction of a slowly dividing de‐differentiated state
M Fallahi‐Sichani, V Becker, B Izar, GJ Baker, JR Lin, SA Boswell, P Shah, ...
Molecular systems biology 13 (1), 905, 2017
Multiscale computational modeling reveals a critical role for TNF-α receptor 1 dynamics in tuberculosis granuloma formation
M Fallahi-Sichani, M El-Kebir, S Marino, DE Kirschner, JJ Linderman
The Journal of Immunology 186 (6), 3472, 2011
Cyclic immunofluorescence (CycIF), a highly multiplexed method for single‐cell imaging
JR Lin, M Fallahi‐Sichani, JY Chen, PK Sorger
Current protocols in chemical biology 8 (4), 251-264, 2016
Differential Risk of Tuberculosis Reactivation among Anti-TNF Therapies Is Due to Drug Binding Kinetics and Permeability
M Fallahi-Sichani, JAL Flynn, JJ Linderman, DE Kirschner
The Journal of Immunology, 2012
NF-κB signaling dynamics play a key role in infection control in tuberculosis
M Fallahi-Sichani, DE Kirschner, JJ Linderman
Frontiers in physiology 3, 24168, 2012
Systematic analysis of BRAFV600E melanomas reveals a role for JNK/c‐Jun pathway in adaptive resistance to drug‐induced apoptosis
M Fallahi‐Sichani, NJ Moerke, M Niepel, T Zhang, NS Gray, PK Sorger
Molecular systems biology 11 (3), 797, 2015
Lipid raft-mediated regulation of G-protein coupled receptor signaling by ligands which influence receptor dimerization: A computational study
M Fallahi-Sichani, JJ Linderman
PLoS One 4 (8), e6604, 2009
Nanofibrous poly (ε-caprolactone)/poly (vinyl alcohol)/chitosan hybrid scaffolds for bone tissue engineering using mesenchymal stem cells
Y Mohammadi, M Soleimani, M Fallahi-Sichani, A Gazme, V Haddadi-Asl, ...
The International journal of artificial organs 30 (3), 204-211, 2007
In vitro differentiation of cord blood unrestricted somatic stem cells expressing dopamine-associated genes into neuron-like cells
M Fallahi-Sichani, M Soleimani, SMA Najafi, J Kiani, E Arefian, A Atashi
Cell biology international 31 (3), 299-303, 2007
Identification of key processes that control tumor necrosis factor availability in a tuberculosis granuloma
M Fallahi-Sichani, MA Schaller, DE Kirschner, SL Kunkel, JJ Linderman
PLoS computational biology 6 (5), e1000778, 2010
Tuneable resolution as a systems biology approach for multi‐scale, multi‐compartment computational models
DE Kirschner, CA Hunt, S Marino, M Fallahi‐Sichani, JJ Linderman
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (4), 289-309, 2014
Dissecting murine muscle stem cell aging through regeneration using integrative genomic analysis
A Shcherbina, J Larouche, P Fraczek, BA Yang, LA Brown, JF Markworth, ...
Cell reports 32 (4), 2020
Epigenetic mechanisms of escape from BRAF oncogene dependency
M Khaliq, M Fallahi-Sichani
Cancers 11 (10), 1480, 2019
AP-1 transcription factor network explains diverse patterns of cellular plasticity in melanoma cells
N Comandante-Lou, DG Baumann, M Fallahi-Sichani
Cell reports 40 (5), 2022
Epigenetic modulation reveals differentiation state specificity of oncogene addiction
M Khaliq, M Manikkam, ED Martinez, M Fallahi-Sichani
Nature communications 12 (1), 1536, 2021
A Systems Biology Approach for Understanding Granuloma Formation and Function in Tuberculosis
M Fallahi-Sichani, S Marino, JAL Flynn, JJ Linderman, DE Kirschner
Systems Biology of Tuberculosis, 127, 2013
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