| Dynamics of long-distance hydrogen-bond networks in photosystem II F Guerra, M Siemers, C Mielack, AN Bondar The Journal of Physical Chemistry B 122 (17), 4625-4641, 2018 | 62 | 2018 |
| Bridge: A graph-based algorithm to analyze dynamic H-bond networks in membrane proteins M Siemers, M Lazaratos, K Karathanou, F Guerra, LS Brown, AN Bondar Journal of chemical theory and computation 15 (12), 6781-6798, 2019 | 40 | 2019 |
| Mechanism of inward proton transport in an antarctic microbial rhodopsin A Harris, M Lazaratos, M Siemers, E Watt, A Hoang, S Tomida, L Schubert, ... The Journal of Physical Chemistry B 124 (24), 4851-4872, 2020 | 33 | 2020 |
| A graph-based approach identifies dynamic H-bond communication networks in spike protein S of SARS-CoV-2 K Karathanou, M Lazaratos, É Bertalan, M Siemers, K Buzar, ... Journal of structural biology 212 (2), 107617, 2020 | 28 | 2020 |
| An RNA sponge controls quorum sensing dynamics and biofilm formation in Vibrio cholerae M Huber, A Lippegaus, S Melamed, M Siemers, BR Wucher, M Hoyos, ... Nature Communications 13 (1), 1-14, 2022 | 21 | 2022 |
| Interactive Interface for Graph-Based Analyses of Dynamic H-Bond Networks: Application to Spike Protein S M Siemers, AN Bondar Journal of Chemical Information and Modeling 61 (6), 2998-3014, 2021 | 19 | 2021 |
| Conserved hydrogen-bond motifs of membrane transporters and receptors M Lazaratos, M Siemers, LS Brown, AN Bondar Biochimica et Biophysica Acta (BBA)-Biomembranes 1864 (6), 183896, 2022 | 9 | 2022 |
| ChimericFragments: computation, analysis and visualization of global RNA networks M Siemers, A Lippegaus, K Papenfort NAR Genomics and Bioinformatics 6 (2), lqae035, 2024 | | 2024 |
| The global RNA–RNA interactome of Klebsiella pneumoniae unveils a small RNA regulator of cell division E Ruhland, M Siemers, R Gerst, F Späth, LN Vogt, MT Figge, K Papenfort, ... Proceedings of the National Academy of Sciences 121 (9), e2317322121, 2024 | | 2024 |
| Small Rnas Direct Attack and Defence Mechanisms in a Quorum Sensing Phage and its Host M Sprenger, M Siemers, S Krautwurst, K Papenfort Available at SSRN 4650796, 0 | | |
