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Stephen Woloszynek
Stephen Woloszynek
Beth Israel Deaconess Medical Center, Harvard University
Verified email at bidmc.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of the royal society interface 15 (141), 20170387, 2018
20212018
Emerging priorities for microbiome research
CM Cullen, KK Aneja, S Beyhan, CE Cho, S Woloszynek, M Convertino, ...
Frontiers in microbiology 11, 491374, 2020
1672020
Long-term urban market dynamics reveal increased bushmeat carcass volume despite economic growth and proactive environmental legislation on Bioko Island, Equatorial Guinea
DT Cronin, S Woloszynek, WA Morra, S Honarvar, JM Linder, MK Gonder, ...
PloS one 10 (7), e0134464, 2015
592015
Metagenomic characterization of ambulances across the USA
NB O’Hara, HJ Reed, E Afshinnekoo, D Harvin, N Caplan, G Rosen, ...
Microbiome 5, 1-20, 2017
392017
16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses
S Woloszynek, Z Zhao, J Chen, GL Rosen
PLoS computational biology 15 (2), e1006721, 2019
382019
Does getting defensive get you anywhere?—Seasonal balancing selection, temperature, and parasitoids shape real‐world, protective endosymbiont dynamics in the pea aphid
AH Smith, MP O’Connor, B Deal, C Kotzer, A Lee, B Wagner, J Joffe, ...
Molecular Ecology 30 (10), 2449-2472, 2021
352021
Artificial intelligence based on machine learning in pharmacovigilance: a scoping review
B Kompa, JB Hakim, A Palepu, KG Kompa, M Smith, PA Bain, ...
Drug Safety 45 (5), 477-491, 2022
292022
Exploring thematic structure and predicted functionality of 16S rRNA amplicon data
S Woloszynek, JC Mell, Z Zhao, G Simpson, MP O’Connor, GL Rosen
PLoS One 14 (12), e0219235, 2019
212019
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network
Z Zhao, S Woloszynek, F Agbavor, JC Mell, BA Sokhansanj, GL Rosen
PLoS computational biology 17 (9), e1009345, 2021
202021
Engineering human microbiota: influencing cellular and community dynamics for therapeutic applications
S Woloszynek, S Pastor, JC Mell, N Nandi, B Sokhansanj, GL Rosen
International review of cell and molecular biology 324, 67-124, 2016
192016
Renin–angiotensin–aldosterone system inhibitors in pediatric focal segmental glomerulosclerosis
S Kangovi, M Edwards, S Woloszynek, N Mitra, H Feldman, BS Kaplan, ...
Pediatric Nephrology 27, 813-819, 2012
152012
Opportunities and obstacles for deep learning in biology and medicine. JR Soc Interface. 2018; 15 (141)
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Epub 2018/04/06. https://doi. org/10.1098/rsif. 2017.0387 PMID: 29618526, 2017
142017
Exploring thematic structure in 16S rRNA marker gene surveys
S Woloszynek, JC Mell, G Simpson, GL Rosen
BioRxiv, 146126, 2017
132017
Opportunities and obstacles for deep learning in biology and medicine. JR Soc Interface. 2018; 15 (141): 20170387
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
112017
Correction to: Artificial Intelligence Based on Machine Learning in Pharmacovigilance: A Scoping Review
B Kompa, JB Hakim, A Palepu, KG Kompa, M Smith, PA Bain, ...
Drug Safety 46 (4), 433-433, 2023
52023
Analysis methods for shotgun metagenomics
S Woloszynek, Z Zhao, G Ditzler, JR Price, ER Reichenberger, Y Lan, ...
Theoretical and Applied Aspects of Systems Biology, 71-112, 2018
52018
Association of anaesthesia provider sex with perioperative complications: a two-centre retrospective cohort study
D von Wedel, S Redaelli, LJ Wachtendorf, E Ahrens, MI Rudolph, D Shay, ...
British Journal of Anaesthesia, 2024
22024
Themetagenomics: exploring thematic structure and predicted functionality of 16s rRNA amplicon data
S Woloszynek, JC Mell, Z Zhao, G Simpson, MP O’Connor, GL Rosen
bioRxiv, 678110, 2019
22019
theseus-An R package for the analysis and visualization of microbial community data
JR Price, S Woloszynek, G Rosen, CM Sales
bioRxiv, 295675, 2018
22018
Evaluating a topic model approach for parsing microbiome data structure
S Woloszynek, Z Zhao, G Simpson, MP O’Connor, JC Mell, GL Rosen
bioRxiv, 176412, 2017
22017
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